RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 DNAJC12Q9UKB3 198 aa10.86□□□□□ -0.67
SS18-210ENST00000578700 SMG5Q9UPR3 1016 aaKnown RBP10.86□□□□□ -0.67
SS18-210ENST00000578700 SF3B1O75533 1304 aaKnown RBP eCLIP10.85□□□□□ -0.674e-6■■■■■ 96
SS18-210ENST00000578700 LRRIQ3A6PVS8 624 aaPredicted RBP10.85□□□□□ -0.67
SS18-210ENST00000578700 OGTO15294 1046 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 NCAM2O15394 837 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 ADAM12O43184 909 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 PHACTR2O75167 634 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 ADRB2P07550 413 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 HARSP12081 509 aaKnown RBP10.85□□□□□ -0.67
SS18-210ENST00000578700 TARSP26639 723 aaKnown RBP10.85□□□□□ -0.67
SS18-210ENST00000578700 TERF1P54274 439 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 MCCD1P59942 119 aaPredicted RBP10.85□□□□□ -0.67
SS18-210ENST00000578700 DLG4P78352 724 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 ARID5AQ03989 594 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 MBTD1Q05BQ5 628 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 PPP3CAQ08209 521 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 GRIK3Q13003 919 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 BIRC3Q13489 604 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 PCBP1Q15365 356 aaKnown RBP eCLIP10.85□□□□□ -0.67
SS18-210ENST00000578700 PSMD5Q16401 504 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 ZNF568Q3ZCX4 644 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 C10orf76Q5T2E6 689 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 MPZL3Q6UWV2 235 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 GPR161Q8N6U8 529 aaKnown RBP10.85□□□□□ -0.67
SS18-210ENST00000578700 ACRBPQ8NEB7 543 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 LNX1Q8TBB1 728 aaPredicted RBP10.85□□□□□ -0.67
SS18-210ENST00000578700 SLC7A14Q8TBB6 771 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 JAKMIP2Q96AA8 810 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 NT5C1BQ96P26 610 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 ACO2Q99798 780 aaKnown RBP10.85□□□□□ -0.67
SS18-210ENST00000578700 PLA2G2FQ9BZM2 168 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 IMPG2Q9BZV3 1241 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 FZD8Q9H461 694 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 GMEB2Q9UKD1 530 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 NDRG2Q9UN36 371 aaKnown RBP10.85□□□□□ -0.67
SS18-210ENST00000578700 TNFSF13BQ9Y275 285 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 PCDHGA2Q9Y5H1 932 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 FHOD1Q9Y613 1164 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 ZFHX4Q86UP3 3567 aa10.85□□□□□ -0.67
SS18-210ENST00000578700 PRR5-ARHGAP8B1AHC4 643 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 GFPT2O94808 682 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 KIF4AO95239 1232 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 HNRNPA1P09651 372 aaKnown RBP eCLIP10.84□□□□□ -0.67
SS18-210ENST00000578700 ATXN8OSP0DMR3 200 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 OR1D2P34982 312 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 SOX5P35711 763 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 ACOT2P49753 483 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 VAV2P52735 878 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 ARHGAP8P85298 464 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 MCL1Q07820 350 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 AMHR2Q16671 573 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 FAM187BQ17R55 369 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 PABPC1LQ4VXU2 614 aaKnown RBP10.84□□□□□ -0.67
SS18-210ENST00000578700 CCDC122Q5T0U0 273 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 IQCEQ6IPM2 695 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 SLC27A1Q6PCB7 646 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 SYT10Q6XYQ8 523 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 ZNF852Q6ZMS4 543 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 ENOSF1Q7L5Y1 443 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 IFNLR1Q8IU57 520 aaPredicted RBP10.84□□□□□ -0.67
SS18-210ENST00000578700 CGRRF1Q99675 332 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 ADPGKQ9BRR6 497 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 DDX23Q9BUQ8 820 aaKnown RBP10.84□□□□□ -0.67
SS18-210ENST00000578700 SIX2Q9NPC8 291 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 UBE2TQ9NPD8 197 aaPredicted RBP10.84□□□□□ -0.67
SS18-210ENST00000578700 HEBP1Q9NRV9 189 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 RAB20Q9NX57 234 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 SNTG2Q9NY99 539 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 ARHGAP20Q9P2F6 1191 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 DNMT3BQ9UBC3 853 aaKnown RBP10.84□□□□□ -0.67
SS18-210ENST00000578700 DNAI1Q9UI46 699 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 RAB23Q9ULC3 237 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 MRPS23Q9Y3D9 190 aaKnown RBP10.84□□□□□ -0.67
SS18-210ENST00000578700 COL4A3Q01955 1670 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 USP24Q9UPU5 2620 aa10.84□□□□□ -0.67
SS18-210ENST00000578700 MYH11P35749 1972 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 F8VZ95 297 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 IL18RAPO95256 599 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 THP07101 528 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 MCF2P10911 925 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 PRKCIP41743 596 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 PIK3CAP42336 1068 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 MAGEA1P43355 309 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 LMNB2Q03252 620 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 SPEM2Q0P670 501 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 TUSC3Q13454 348 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 GRM2Q14416 872 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 DRAP1Q14919 205 aaPredicted RBP10.83□□□□□ -0.68
SS18-210ENST00000578700 ENOX2Q16206 610 aaKnown RBP10.83□□□□□ -0.68
SS18-210ENST00000578700 ARHGAP44Q17R89 818 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 RSPO2Q6UXX9 243 aaPredicted RBP10.83□□□□□ -0.68
SS18-210ENST00000578700 PRR23BQ6ZRT6 265 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 ZNF662Q6ZS27 426 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 WDR49Q8IV35 697 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 BRSK2Q8IWQ3 736 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 NPAS3Q8IXF0 933 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 GPR65Q8IYL9 337 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 PPM1KQ8N3J5 372 aa10.83□□□□□ -0.68
SS18-210ENST00000578700 ZBTB44Q8NCP5 570 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms