RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 GLE1Q53GS7 698 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 FASTKD1Q53R41 847 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 HP1BP3Q5SSJ5 553 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 GPR158Q5T848 1215 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 NUGGCQ68CJ6 796 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 UGT3A1Q6NUS8 523 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 TPGS1Q6ZTW0 290 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CENPUQ71F23 418 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CYB5R4Q7L1T6 521 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 C11orf96Q7Z7L8 435 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SGMS1Q86VZ5 419 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 HOMEZQ8IX15 550 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 TMEM86AQ8N2M4 240 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 EFCAB3Q8N7B9 438 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SUN3Q8TAQ9 357 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PYROXD1Q8WU10 500 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 RSPH1Q8WYR4 309 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 KIAA1143Q96AT1 154 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 MCRS1Q96EZ8 462 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CYFIP2Q96F07 1278 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 FAM163AQ96GL9 167 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CPB2Q96IY4 423 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 C2orf49Q9BVC5 232 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 INTS2Q9H0H0 1204 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 LY9Q9HBG7 655 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ZCCHC17Q9NP64 241 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 DMAP1Q9NPF5 467 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SPATA6Q9NWH7 488 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.06□□□□□ -1.927e-6■■■■□ 21.6
SMCHD1-203ENST00000577880 ARHGAP26Q9UNA1 814 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 COL5A2P05997 1499 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SALL1Q9NSC2 1324 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 TARSL2A2RTX5 802 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 LRRC53A6NM62 1247 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 MIF4GDA9UHW6 222 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 HMGB3O15347 200 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CFLARO15519 480 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 USP2O75604 605 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 KRT37O76014 449 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ARIH2O95376 493 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 IL1BP01584 269 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 HLA-DRAP01903 254 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 MMP3P08254 477 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 KCNA2P16389 499 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CHRM3P20309 590 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 RPA1P27694 616 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 LSP1P33241 339 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CYP2C18P33260 490 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 OR1D2P34982 312 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 NOS2P35228 1153 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ANXA11P50995 505 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 FXR1P51114 621 aaKnown RBP eCLIP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ACLYP53396 1101 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 BCAT1P54687 386 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CASP6P55212 293 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 HNRNPH2P55795 449 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ACTN3Q08043 901 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CAPRIN1Q14444 709 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PGM5Q15124 567 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 UGP2Q16851 508 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 P3H1Q32P28 736 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 AASDHQ4L235 1098 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CEP85LQ5SZL2 805 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CELF3Q5SZQ8 465 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 APOBEC3HQ6NTF7 200 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CNKSR3Q6P9H4 555 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 DCLRE1AQ6PJP8 1040 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 FAM124AQ86V42 546 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 LZTR1Q8N653 840 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 RBBP8NLQ8NC74 664 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF248Q8NDW4 579 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 OR8D1Q8WZ84 308 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SERPINB11Q96P15 392 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 LRRC37BQ96QE4 947 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 BBS2Q9BXC9 721 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ADGRE3Q9BY15 652 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ASB7Q9H672 318 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CAPN10Q9HC96 672 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ATP13A1Q9HD20 1204 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 FANCFQ9NPI8 374 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 KRT82Q9NSB4 513 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 RRN3Q9NYV6 651 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 STOML1Q9UBI4 398 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 RWDD2AQ9UIY3 292 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 DDX41Q9UJV9 622 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ST3GAL5Q9UNP4 418 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 RUVBL2Q9Y230 463 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 DIS3Q9Y2L1 958 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 GIT1Q9Y2X7 761 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 DAAM1Q9Y4D1 1078 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PCDHB3Q9Y5E6 796 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 TIMM13Q9Y5L4 95 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SAR1BQ9Y6B6 198 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SNCAIPQ9Y6H5 919 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 AK5Q9Y6K8 562 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 USH1CQ9Y6N9 552 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 LRRIQ1Q96JM4 1722 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF839A8K0R7 811 aa3.05□□□□□ -1.92
SMCHD1-203ENST00000577880 PIK3R2O00459 728 aa3.05□□□□□ -1.92
SMCHD1-203ENST00000577880 CASQ2O14958 399 aaPredicted RBP3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms