RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ARMT1Q9H993 441 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 NMRK2Q9NPI5 230 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 SERHLQ9NQF3 203 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 TYW1Q9NV66 732 aaKnown RBP3.63□□□□□ -1.83
VPS35-207ENST00000568191 NDRG4Q9ULP0 352 aaKnown RBP3.63□□□□□ -1.83
VPS35-207ENST00000568191 MED16Q9Y2X0 877 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 A0A1W2PPL8 197 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 POC1B-GALNT4F8VUJ3 575 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 AP1G1O43747 822 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 PHKG2P15735 406 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 MPGP29372 298 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 PRKAR1BP31321 381 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 PRKAG1P54619 331 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 KRTAP10-11P60412 298 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 IGBP1P78318 339 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 TFF2Q03403 129 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 RAB32Q13637 225 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 BOP1Q14137 746 aaKnown RBP3.62□□□□□ -1.83
VPS35-207ENST00000568191 PXDC1Q5TGL8 231 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 ZNF626Q68DY1 528 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 SLC18B1Q6NT16 456 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 MIS18BP1Q6P0N0 1132 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 SERPINA13PQ6UXR4 307 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 ZNF782Q6ZMW2 699 aaPredicted RBP3.62□□□□□ -1.83
VPS35-207ENST00000568191 YTHDF3Q7Z739 585 aaKnown RBP3.62□□□□□ -1.83
VPS35-207ENST00000568191 GALNT4Q8N4A0 578 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 ATG4AQ8WYN0 398 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 GPATCH3Q96I76 525 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 FCRL4Q96PJ5 515 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 FSD1LQ9BXM9 530 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 SERGEFQ9UGK8 458 aa3.62□□□□□ -1.83
VPS35-207ENST00000568191 COL3A1P02461 1466 aaPredicted RBP3.61□□□□□ -1.83
VPS35-207ENST00000568191 A0A088AWK7 358 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 PROB1E7EW31 1015 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 H3BML4 177 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 H7C1Q1 480 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 MYO1FO00160 1098 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 DCLK1O15075 740 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 EXOC3O60645 756 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 ALDH1L1O75891 902 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 USP1O94782 785 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 ALDH2P05091 517 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 CHRM5P08912 532 aaPredicted RBP3.61□□□□□ -1.83
VPS35-207ENST00000568191 MYCLP12524 364 aaPredicted RBP3.61□□□□□ -1.83
VPS35-207ENST00000568191 NCLP19338 710 aaKnown RBP3.61□□□□□ -1.83
VPS35-207ENST00000568191 CTGFP29279 349 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 SLC11A2P49281 568 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 UCP3P55916 312 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 SUMO2P61956 95 aaKnown RBP3.61□□□□□ -1.83
VPS35-207ENST00000568191 L1TD1Q5T7N2 865 aaKnown RBP3.61□□□□□ -1.83
VPS35-207ENST00000568191 DEPDC1Q5TB30 811 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 CATSPERGQ6ZRH7 1159 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 Q6ZWC4 215 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 CNGA4Q8IV77 575 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 SPARTQ8N0X7 666 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 SIRT6Q8N6T7 355 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 DNAJC5GQ8N7S2 189 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 NGDNQ8NEJ9 315 aaKnown RBP3.61□□□□□ -1.83
VPS35-207ENST00000568191 PRSS3P2Q8NHM4 247 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 KBTBD7Q8WVZ9 684 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 SUCLG2Q96I99 432 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 FYTTD1Q96QD9 318 aaKnown RBP3.61□□□□□ -1.83
VPS35-207ENST00000568191 ZNF180Q9UJW8 692 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 SSX2IPQ9Y2D8 614 aa3.61□□□□□ -1.83
VPS35-207ENST00000568191 IKBKBO14920 756 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 TJP3O95049 919 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 LATS1O95835 1130 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 HTR1BP28222 390 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 PCSK6P29122 969 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 MTHFSP49914 203 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 DGKEP52429 567 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 RAB1AP62820 205 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 CYP4F2P78329 520 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 SSBP2P81877 361 aaPredicted RBP3.6□□□□□ -1.83
VPS35-207ENST00000568191 MYO1EQ12965 1108 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 TRIP6Q15654 476 aaKnown RBP3.6□□□□□ -1.83
VPS35-207ENST00000568191 INSCQ1MX18 579 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 IZUMO1Q8IYV9 350 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 MPP5Q8N3R9 675 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 GALNT16Q8N428 558 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 SLC15A4Q8N697 577 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 ZNF366Q8N895 744 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 TERB1Q8NA31 727 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 CYP2W1Q8TAV3 490 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 DIS3LQ8TF46 1054 aaKnown RBP3.6□□□□□ -1.83
VPS35-207ENST00000568191 JPH3Q8WXH2 748 aaPredicted RBP3.6□□□□□ -1.83
VPS35-207ENST00000568191 SOCS4Q8WXH5 440 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 CUL5Q93034 780 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 PPP2R3CQ969Q6 453 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 REPS1Q96D71 796 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 RSPRY1Q96DX4 576 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 CCDC17Q96LX7 622 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 AIFM3Q96NN9 605 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 SNX18Q96RF0 628 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 CAMKK2Q96RR4 588 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 FAM118BQ9BPY3 351 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 TUBA8Q9NY65 449 aaPredicted RBP3.6□□□□□ -1.83
VPS35-207ENST00000568191 PI4KBQ9UBF8 816 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 BTBD3Q9Y2F9 522 aa3.6□□□□□ -1.83
VPS35-207ENST00000568191 ZNF521Q96K83 1311 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms