RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 MYO16Q9Y6X6 1858 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 COL4A3Q01955 1670 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 F8VP50 259 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 ZNF197O14709 1029 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 F11P03951 625 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 GABRR2P28476 465 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 RAD23BP54727 409 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 USP46P62068 366 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 ZXDAP98168 799 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 TYRO3Q06418 890 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 LRMPQ12912 555 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 VEPH1Q14D04 833 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 KLHL40Q2TBA0 621 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 HSP90AA4PQ58FG1 418 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 WDR44Q5JSH3 913 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 MIIPQ5JXC2 388 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 CDKAL1Q5VV42 579 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 ARHGEF19Q8IW93 802 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 SCN4BQ8IWT1 228 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 SLC4A11Q8NBS3 891 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 EHBP1Q8NDI1 1231 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 ZMIZ2Q8NF64 920 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 FAM200AQ8TCP9 573 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 SLC2A14Q8TDB8 520 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 KAT5Q92993 513 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 C8orf48Q96LL4 319 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 CEP295NLQ96MC4 621 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 FUCA2Q9BTY2 467 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 RPP25Q9BUL9 199 aaKnown RBP10.42□□□□□ -0.74
CLK3-220ENST00000567992 NT5C1AQ9BXI3 368 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 INTS2Q9H0H0 1204 aaKnown RBP10.42□□□□□ -0.74
CLK3-220ENST00000567992 HSD3B7Q9H2F3 369 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 KRT82Q9NSB4 513 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 FAM49BQ9NUQ9 324 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 IGSF9Q9P2J2 1179 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 NFE2L3Q9Y4A8 694 aa10.42□□□□□ -0.74
CLK3-220ENST00000567992 MYH10P35580 1976 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 KCNJ18B7U540 433 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 TNFRSF10BO14763 440 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 TRIM66O15016 1216 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 NARSO43776 548 aaKnown RBP10.41□□□□□ -0.74
CLK3-220ENST00000567992 BEST1O76090 585 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 CSH1P0DML2 217 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 CSH2P0DML3 217 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 ALADP13716 330 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 GRIK1P39086 918 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 CYP4F8P98187 520 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 APBA1Q02410 837 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 GCNT1Q02742 428 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 TDGQ13569 410 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 KCNJ12Q14500 433 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 NCAPHQ15003 741 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 MAN2A1Q16706 1144 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 FAM78AQ5JUQ0 283 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 PHLDB3Q6NSJ2 640 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 DPY19L2P1Q6NXN4 242 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 TRIM65Q6PJ69 517 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 SASS6Q6UVJ0 657 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 DENND5BQ6ZUT9 1274 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 TTC39CQ8N584 583 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 EDAQ92838 391 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 RSPRY1Q96DX4 576 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 SMARCD1Q96GM5 515 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 KREMEN1Q96MU8 473 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 ASB16Q96NS5 453 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 NT5C1BQ96P26 610 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 KCNK16Q96T55 309 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 HNRNPABQ99729 332 aaKnown RBP10.41□□□□□ -0.74
CLK3-220ENST00000567992 SMOQ99835 787 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 KXD1Q9BQD3 176 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 TTLL2Q9BWV7 592 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 PLA2G2FQ9BZM2 168 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 CSNK1G1Q9HCP0 422 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 ANO10Q9NW15 660 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 GCNT4Q9P109 453 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 DUSP12Q9UNI6 340 aa10.41□□□□□ -0.74
CLK3-220ENST00000567992 GTPBP10A4D1E9 387 aaKnown RBP10.4□□□□□ -0.74
CLK3-220ENST00000567992 ECI2O75521 394 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 FGF19O95750 216 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 TBXAS1P24557 533 aaPredicted RBP10.4□□□□□ -0.74
CLK3-220ENST00000567992 EEF1GP26641 437 aaKnown RBP10.4□□□□□ -0.74
CLK3-220ENST00000567992 CDC25CP30307 473 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 MTIF2P46199 727 aaKnown RBP10.4□□□□□ -0.74
CLK3-220ENST00000567992 ZNF132P52740 706 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 TPD52L1Q16890 204 aaPredicted RBP10.4□□□□□ -0.74
CLK3-220ENST00000567992 ZNF394Q53GI3 561 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 TCP11X2Q5H9J9 407 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 PPP1R26Q5T8A7 1209 aaPredicted RBP10.4□□□□□ -0.74
CLK3-220ENST00000567992 TANGO2Q6ICL3 276 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 CLEC20AQ6ZU45 233 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 MTSS1LQ765P7 747 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 RRAGAQ7L523 313 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 FAM114A1Q8IWE2 563 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 UBALD2Q8IYN6 164 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 PPM1KQ8N3J5 372 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 SLC44A3Q8N4M1 653 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 ZSCAN18Q8TBC5 510 aaPredicted RBP10.4□□□□□ -0.74
CLK3-220ENST00000567992 SMARCD2Q92925 531 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 NXPE3Q969Y0 559 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 ASIC4Q96FT7 647 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms