RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 MAGEA9P43362 315 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 CYP4F8P98187 520 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 PLCB2Q00722 1185 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 CCDC142Q17RM4 750 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 ARHGAP29Q52LW3 1261 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 SDHAF4Q5VUM1 108 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 MSANTD3Q96H12 275 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 C8orf48Q96LL4 319 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 SLC46A2Q9BY10 475 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 DNAI2Q9GZS0 605 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 SMYD3Q9H7B4 428 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 TMEM8AQ9HCN3 771 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 ANP32AP39687 249 aaKnown RBP19.93■□□□□ 0.78
CLN3-227ENST00000567495 GCLMP48507 274 aa19.93■□□□□ 0.78
CLN3-227ENST00000567495 TPRG1Q6ZUI0 275 aa19.93■□□□□ 0.78
CLN3-227ENST00000567495 DENND5BQ6ZUT9 1274 aa19.93■□□□□ 0.78
CLN3-227ENST00000567495 UNC93AQ86WB7 457 aa19.93■□□□□ 0.78
CLN3-227ENST00000567495 ADSSL1Q8N142 457 aa19.93■□□□□ 0.78
CLN3-227ENST00000567495 DHTKD1Q96HY7 919 aaPredicted RBP19.93■□□□□ 0.78
CLN3-227ENST00000567495 FAXDC2Q96IV6 333 aa19.93■□□□□ 0.78
CLN3-227ENST00000567495 KIF9Q9HAQ2 790 aa19.93■□□□□ 0.78
CLN3-227ENST00000567495 CYP3A43Q9HB55 503 aa19.93■□□□□ 0.78
CLN3-227ENST00000567495 LTB4R2Q9NPC1 389 aa19.93■□□□□ 0.78
CLN3-227ENST00000567495 FAM170BA6NMN3 283 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 SLC16A3O15427 465 aaKnown RBP19.92■□□□□ 0.78
CLN3-227ENST00000567495 TRIM49P0CI25 452 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 TRIM49CP0CI26 452 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 PFKLP17858 780 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 PPP3CCP48454 512 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 PDE6CP51160 858 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 CDH8P55286 799 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 NOP14P78316 857 aaKnown RBP19.92■□□□□ 0.78
CLN3-227ENST00000567495 PPP3CAQ08209 521 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 ZNF268Q14587 947 aaPredicted RBP19.92■□□□□ 0.78
CLN3-227ENST00000567495 UBXN2BQ14CS0 331 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 KRT39Q6A163 491 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 ZC3H3Q8IXZ2 948 aaKnown RBP19.92■□□□□ 0.78
CLN3-227ENST00000567495 MAB21L3Q8N8X9 362 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 BPIFB1Q8TDL5 484 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 CSGALNACT1Q8TDX6 532 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 ATOH1Q92858 354 aaPredicted RBP19.92■□□□□ 0.78
CLN3-227ENST00000567495 RSPRY1Q96DX4 576 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 BCO2Q9BYV7 579 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 FOXQ1Q9C009 403 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 DPEP3Q9H4B8 488 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 C8orf33Q9H7E9 229 aaPredicted RBP19.92■□□□□ 0.78
CLN3-227ENST00000567495 HEBP1Q9NRV9 189 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 NME7Q9Y5B8 376 aa19.92■□□□□ 0.78
CLN3-227ENST00000567495 F8VP50 259 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 H0Y858 1186 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 ARNTLO00327 626 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 DCNP07585 359 aaKnown RBP19.91■□□□□ 0.78
CLN3-227ENST00000567495 HOXD11P31277 338 aaPredicted RBP19.91■□□□□ 0.78
CLN3-227ENST00000567495 UBE2HP62256 183 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 FOXR2Q6PJQ5 311 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 SCARA5Q6ZMJ2 495 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 CRYBG2Q8N1P7 616 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 TTC39CQ8N584 583 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 TAS1R2Q8TE23 839 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 TTLL2Q9BWV7 592 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 B3GNT5Q9BYG0 378 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 TDP1Q9NUW8 608 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 DLGAP2Q9P1A6 1054 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 WDFY4Q6ZS81 3184 aa19.91■□□□□ 0.78
CLN3-227ENST00000567495 KMT2EQ8IZD2 1858 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 F5P12259 2224 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 TRAV19A0A0A6YYK7 116 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 PRAMEF12O95522 483 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 ASPAP45381 313 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 TXNDC8Q6A555 127 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 ANKRD40Q6AI12 368 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 ERCC4Q92889 916 aaPredicted RBP19.9■□□□□ 0.78
CLN3-227ENST00000567495 CLDN23Q96B33 292 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 ZNF518BQ9C0D4 1074 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 NIF3L1Q9GZT8 377 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 SDCBP2Q9H190 292 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 FAM124BQ9H5Z6 455 aaPredicted RBP19.9■□□□□ 0.78
CLN3-227ENST00000567495 MAN1B1Q9UKM7 699 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 PIAS3Q9Y6X2 628 aa19.9■□□□□ 0.78
CLN3-227ENST00000567495 NCANO14594 1321 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 GADD45BO75293 160 aaPredicted RBP19.89■□□□□ 0.77
CLN3-227ENST00000567495 USP17L7P0C7H9 530 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 CCNE1P24864 410 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 RPS9P46781 194 aaKnown RBP19.89■□□□□ 0.77
CLN3-227ENST00000567495 RAP1GAPP47736 663 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 MXI1P50539 228 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 KPNA1P52294 538 aaPredicted RBP19.89■□□□□ 0.77
CLN3-227ENST00000567495 INCA1Q0VD86 236 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 ANGPT1Q15389 498 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 STKLD1Q8NE28 680 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 FBXL13Q8NEE6 735 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 USP13Q92995 863 aaPredicted RBP19.89■□□□□ 0.77
CLN3-227ENST00000567495 EEF2KMTQ96G04 330 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 SMARCD1Q96GM5 515 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 LRRC3BQ96PB8 259 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 METTL14Q9HCE5 456 aaKnown RBP19.89■□□□□ 0.77
CLN3-227ENST00000567495 TRPM5Q9NZQ8 1165 aa19.89■□□□□ 0.77
CLN3-227ENST00000567495 ARMCX3Q9UH62 379 aaPredicted RBP19.89■□□□□ 0.77
CLN3-227ENST00000567495 BICDL2A1A5D9 508 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 TADA3O75528 432 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms