RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 DEFB124Q8NES8 71 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 TTC8Q8TAM2 541 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 GOLGA5Q8TBA6 731 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 SAAL1Q96ER3 474 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 EEF2KMTQ96G04 330 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 MED15Q96RN5 788 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 TMEM209Q96SK2 561 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 HAPLN2Q9GZV7 340 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 NAT10Q9H0A0 1025 aaKnown RBP12.18□□□□□ -0.46
CLN3-226ENST00000567160 PTPRHQ9HD43 1115 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 GTSE1Q9NYZ3 720 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 TRAF3IP3Q9Y228 551 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 GPSM3Q9Y4H4 160 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 NUP210Q8TEM1 1887 aaPredicted RBP12.18□□□□□ -0.46
CLN3-226ENST00000567160 KIF26AQ9ULI4 1882 aaPredicted RBP12.18□□□□□ -0.46
CLN3-226ENST00000567160 ATG2BQ96BY7 2078 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 IGSF10Q6WRI0 2623 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 LOC400499M0QZD8 3231 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 A0A0B4J269 797 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 TULP1O00294 542 aaPredicted RBP12.17□□□□□ -0.46
CLN3-226ENST00000567160 SEC24AO95486 1093 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 GJA1P17302 382 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 GARTP22102 1010 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 NR2F2P24468 414 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 GBP1P32455 592 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 ZNF165P49910 485 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 CLCNKBP51801 687 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 OSTNP61366 133 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 SNRPFP62306 86 aaKnown RBP12.17□□□□□ -0.46
CLN3-226ENST00000567160 ADAM9Q13443 819 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 UPP1Q16831 310 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 UAP1L1Q3KQV9 507 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 DCAF4L1Q3SXM0 396 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 CT47A1Q5JQC4 288 aaPredicted RBP12.17□□□□□ -0.46
CLN3-226ENST00000567160 CEP135Q66GS9 1140 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 SLFN12LQ6IEE8 588 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 APBB1IPQ7Z5R6 666 aaPredicted RBP12.17□□□□□ -0.46
CLN3-226ENST00000567160 CSGALNACT2Q8N6G5 542 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 SHKBP1Q8TBC3 707 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 DUSP9Q99956 384 aaKnown RBP12.17□□□□□ -0.46
CLN3-226ENST00000567160 ANP32EQ9BTT0 268 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 MKNK1Q9BUB5 465 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 OBP2AQ9NY56 170 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 HSPBP1Q9NZL4 362 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 CEP72Q9P209 647 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 CGNQ9P2M7 1197 aaKnown RBP12.17□□□□□ -0.46
CLN3-226ENST00000567160 AFF4Q9UHB7 1163 aaKnown RBP12.17□□□□□ -0.46
CLN3-226ENST00000567160 KLK13Q9UKR3 277 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 AGO2Q9UKV8 859 aaKnown RBP12.17□□□□□ -0.46
CLN3-226ENST00000567160 STYXL1Q9Y6J8 313 aa12.17□□□□□ -0.46
CLN3-226ENST00000567160 THADAQ6YHU6 1953 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 LAMA5O15230 3695 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 I3L4J1 428 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 SYN3O14994 580 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 EXOC3O60645 756 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 ZIC2O95409 532 aaPredicted RBP12.16□□□□□ -0.46
CLN3-226ENST00000567160 MCF2P10911 925 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 RPL13P26373 211 aaKnown RBP12.16□□□□□ -0.46
CLN3-226ENST00000567160 CASP4P49662 377 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 ACOT2P49753 483 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 AMPD2Q01433 879 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 MYL5Q02045 173 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 MCL1Q07820 350 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 LMAN2Q12907 356 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 PLD1Q13393 1074 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 EDRF1Q3B7T1 1238 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 ITPRIPL2Q3MIP1 535 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 HSP90AA4PQ58FG1 418 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 C19orf48Q6RUI8 117 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 ARID3BQ8IVW6 561 aaPredicted RBP12.16□□□□□ -0.46
CLN3-226ENST00000567160 C12orf56Q8IXR9 622 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 CEP120Q8N960 986 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 RDH13Q8NBN7 331 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 EXOC4Q96A65 974 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 RSPRY1Q96DX4 576 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 FAM213AQ9BRX8 229 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 SRRTQ9BXP5 876 aaKnown RBP12.16□□□□□ -0.46
CLN3-226ENST00000567160 CBX8Q9HC52 389 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 DMAC2Q9NW81 257 aa12.16□□□□□ -0.46
CLN3-226ENST00000567160 THG1LQ9NWX6 298 aaKnown RBP12.16□□□□□ -0.46
CLN3-226ENST00000567160 FREM2Q5SZK8 3169 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 A0A1W2PRU2 124 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 CDX4O14627 284 aaPredicted RBP12.15□□□□□ -0.46
CLN3-226ENST00000567160 CETN3O15182 167 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 OGTO15294 1046 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 APBB3O95704 486 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 FGF19O95750 216 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 TNFSF9P41273 254 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 BRCC3P46736 316 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 FKBP3Q00688 224 aaKnown RBP12.15□□□□□ -0.46
CLN3-226ENST00000567160 NFIL3Q16649 462 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 CTXN3Q4LDR2 81 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 SPATA1Q5VX52 437 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 ZNF280DQ6N043 979 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 PKN3Q6P5Z2 889 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 CYP2U1Q7Z449 544 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 LUZP1Q86V48 1076 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 SLC9A9Q8IVB4 645 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 DHX40Q8IX18 779 aaKnown RBP12.15□□□□□ -0.46
CLN3-226ENST00000567160 GPD1LQ8N335 351 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms