RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 SLC22A12Q96S37 553 aa18.13■□□□□ 0.49
CDH3-205ENST00000566808 RPF1Q9H9Y2 349 aaKnown RBP18.13■□□□□ 0.49
CDH3-205ENST00000566808 RAXQ9Y2V3 346 aa18.13■□□□□ 0.49
CDH3-205ENST00000566808 ANO9A1A5B4 782 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 E9PMD0 336 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 CYB561D2O14569 222 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 PLS3P13797 630 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 GUCY2CP25092 1073 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 FOSBP53539 338 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 KCNB1Q14721 858 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 NFE2Q16621 373 aaPredicted RBP18.12■□□□□ 0.49
CDH3-205ENST00000566808 EOGTQ5NDL2 527 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 JADE1Q6IE81 842 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 C1orf186Q6ZWK4 172 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 CENPQQ7L2Z9 268 aaPredicted RBP18.12■□□□□ 0.49
CDH3-205ENST00000566808 CD302Q8IX05 232 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 FRMD1Q8N878 549 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 IL17RCQ8NAC3 791 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 TXNDC5Q8NBS9 432 aaKnown RBP18.12■□□□□ 0.49
CDH3-205ENST00000566808 MDM1Q8TC05 714 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 SH3RF2Q8TEC5 729 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 LEO1Q8WVC0 666 aaPredicted RBP18.12■□□□□ 0.49
CDH3-205ENST00000566808 HMGB4Q8WW32 186 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 MYRFLQ96LU7 910 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 YTHDC1Q96MU7 727 aaKnown RBP18.12■□□□□ 0.49
CDH3-205ENST00000566808 PYM1Q9BRP8 204 aaKnown RBP18.12■□□□□ 0.49
CDH3-205ENST00000566808 CCSER1Q9C0I3 900 aa18.12■□□□□ 0.49
CDH3-205ENST00000566808 GOLGA4Q13439 2230 aaKnown RBP18.11■□□□□ 0.49
CDH3-205ENST00000566808 ANTXRLA6NF34 631 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 H0YCG3 227 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 SGK1O00141 431 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 ARHGAP33O14559 1287 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 OGTO15294 1046 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 PRPF40AO75400 957 aaKnown RBP18.11■□□□□ 0.49
CDH3-205ENST00000566808 KLF8O95600 359 aaPredicted RBP18.11■□□□□ 0.49
CDH3-205ENST00000566808 SYPP08247 313 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 NFICP08651 508 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 CHRM1P11229 460 aaPredicted RBP18.11■□□□□ 0.49
CDH3-205ENST00000566808 GPR15P49685 360 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 TSPY1Q01534 308 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 RPL6Q02878 288 aaKnown RBP18.11■□□□□ 0.49
CDH3-205ENST00000566808 TMEM132DQ14C87 1099 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 ZNF174Q15697 407 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 GAB4Q2WGN9 574 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 SLC36A4Q6YBV0 504 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 NSUN7Q8NE18 718 aaKnown RBP18.11■□□□□ 0.49
CDH3-205ENST00000566808 SPATA18Q8TC71 538 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 RAB34Q9BZG1 259 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 ABCB6Q9NP58 842 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 DKK4Q9UBT3 224 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 ARHGAP26Q9UNA1 814 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 APOBEC2Q9Y235 224 aaKnown RBP18.11■□□□□ 0.49
CDH3-205ENST00000566808 DERAQ9Y315 318 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 PCDHB9Q9Y5E1 797 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 MYOFQ9NZM1 2061 aa18.11■□□□□ 0.49
CDH3-205ENST00000566808 SHROOM3Q8TF72 1996 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 SFI1A8K8P3 1242 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 HNRNPDLO14979 420 aaKnown RBP18.1■□□□□ 0.49
CDH3-205ENST00000566808 EIF2DP41214 584 aaKnown RBP18.1■□□□□ 0.49
CDH3-205ENST00000566808 TAF6P49848 677 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 LIG4P49917 911 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 PDE6CP51160 858 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 RPL10AP62906 217 aaKnown RBP18.1■□□□□ 0.49
CDH3-205ENST00000566808 PDIA5Q14554 519 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 SAFBQ15424 915 aaKnown RBP eCLIP18.1■□□□□ 0.49
CDH3-205ENST00000566808 TTC38Q5R3I4 469 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 WSCD1Q658N2 575 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 NAXDQ8IW45 347 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 IGSF22Q8N9C0 903 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 OR2I1PQ8NGU4 316 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 GTF3C6Q969F1 213 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 CAMK1GQ96NX5 476 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 CYP2S1Q96SQ9 504 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 PI4K2AQ9BTU6 479 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 GCNT4Q9P109 453 aa18.1■□□□□ 0.49
CDH3-205ENST00000566808 TCRBV21S2A2A0A5A6 115 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 SH3BP5O60239 455 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 GJB3O75712 270 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 CYP17A1P05093 508 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 TIE1P35590 1138 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 ANKRD1Q15327 319 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 SDHAF4Q5VUM1 108 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 PGBD3Q8N328 593 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 KIAA1958Q8N8K9 716 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 ARL14EPQ8N8R7 260 aaPredicted RBP18.09■□□□□ 0.49
CDH3-205ENST00000566808 FSIP1Q8NA03 581 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 KCNN1Q92952 543 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 FAM212AQ96EL1 285 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 LINC00597Q9H2U6 94 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 TMLHEQ9NVH6 421 aa18.09■□□□□ 0.49
CDH3-205ENST00000566808 MYMKA6NI61 221 aa18.08■□□□□ 0.48
CDH3-205ENST00000566808 APODP05090 189 aa18.08■□□□□ 0.48
CDH3-205ENST00000566808 CDC25AP30304 524 aa18.08■□□□□ 0.48
CDH3-205ENST00000566808 ZNF33AQ06730 810 aa18.08■□□□□ 0.48
CDH3-205ENST00000566808 C19orf57Q0VDD7 668 aa18.08■□□□□ 0.48
CDH3-205ENST00000566808 NBR1Q14596 966 aa18.08■□□□□ 0.48
CDH3-205ENST00000566808 ZC2HC1CQ53FD0 456 aaPredicted RBP18.08■□□□□ 0.48
CDH3-205ENST00000566808 KRT79Q5XKE5 535 aa18.08■□□□□ 0.48
CDH3-205ENST00000566808 GLRX5Q86SX6 157 aa18.08■□□□□ 0.48
CDH3-205ENST00000566808 PNPLA1Q8N8W4 532 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms