RNA–Protein interactions for RNA: ENST00000565662.5

USB1-211, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 719 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-211ENST00000565662 XYLT2Q9H1B5 865 aa17.85■□□□□ 0.45
USB1-211ENST00000565662 TDP1Q9NUW8 608 aa17.85■□□□□ 0.45
USB1-211ENST00000565662 TMLHEQ9NVH6 421 aa17.85■□□□□ 0.45
USB1-211ENST00000565662 MAGED2Q9UNF1 606 aaPredicted RBP17.85■□□□□ 0.45
USB1-211ENST00000565662 MYBPHLA2RUH7 354 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 SLC38A8A6NNN8 435 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 RTN3O95197 1032 aaPredicted RBP17.84■□□□□ 0.45
USB1-211ENST00000565662 CST3P01034 146 aaPredicted RBP17.84■□□□□ 0.45
USB1-211ENST00000565662 C4BPAP04003 597 aaKnown RBP17.84■□□□□ 0.45
USB1-211ENST00000565662 DCNP07585 359 aaKnown RBP17.84■□□□□ 0.45
USB1-211ENST00000565662 TCF3P15923 654 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 VIPR2P41587 438 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 PIK3CAP42336 1068 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 VAMP7P51809 220 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 KPNA1P52294 538 aaPredicted RBP17.84■□□□□ 0.45
USB1-211ENST00000565662 MYL6P60660 151 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 PDGFRLQ15198 375 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 TDRD10Q5VZ19 366 aaKnown RBP17.84■□□□□ 0.45
USB1-211ENST00000565662 SCN4BQ8IWT1 228 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 FAM186BQ8IYM0 893 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 SYNPOQ8N3V7 929 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 CCDC26Q8TAB7 109 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 OVCA2Q8WZ82 227 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 PCED1BQ96HM7 432 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 SLITRK1Q96PX8 696 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 FOXQ1Q9C009 403 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 COMMD8Q9NX08 183 aa17.84■□□□□ 0.45
USB1-211ENST00000565662 NXF1Q9UBU9 619 aaKnown RBP17.84■□□□□ 0.45
USB1-211ENST00000565662 ARNTLO00327 626 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 CETN3O15182 167 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 GFRA3O60609 400 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 EPB41P11171 864 aaKnown RBP17.83■□□□□ 0.44
USB1-211ENST00000565662 PTPN1P18031 435 aaKnown RBP17.83■□□□□ 0.44
USB1-211ENST00000565662 NRLP54845 237 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 CYP4F8P98187 520 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 LRRC63Q05C16 580 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 ADAM9Q13443 819 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 DGKKQ5KSL6 1271 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 DDX42Q86XP3 938 aaKnown RBP eCLIP17.83■□□□□ 0.44
USB1-211ENST00000565662 FMR1NBQ8N0W7 255 aaPredicted RBP17.83■□□□□ 0.44
USB1-211ENST00000565662 TTLL2Q9BWV7 592 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 GOLPH3LQ9H4A5 285 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 SPATA6Q9NWH7 488 aaPredicted RBP17.83■□□□□ 0.44
USB1-211ENST00000565662 TRPM5Q9NZQ8 1165 aa17.83■□□□□ 0.44
USB1-211ENST00000565662 GREB1Q4ZG55 1949 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 NCANO14594 1321 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 SLC16A3O15427 465 aaKnown RBP17.82■□□□□ 0.44
USB1-211ENST00000565662 KINO60870 393 aaKnown RBP17.82■□□□□ 0.44
USB1-211ENST00000565662 TARSP26639 723 aaKnown RBP17.82■□□□□ 0.44
USB1-211ENST00000565662 CCR3P51677 355 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 PSMC1P62191 440 aaKnown RBP17.82■□□□□ 0.44
USB1-211ENST00000565662 DDR2Q16832 855 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 ITPRIPL2Q3MIP1 535 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 MDH1BQ5I0G3 518 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 ZNF658Q5TYW1 1059 aaPredicted RBP17.82■□□□□ 0.44
USB1-211ENST00000565662 MAB21L3Q8N8X9 362 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 STKLD1Q8NE28 680 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 ZNF516Q92618 1163 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 SMARCE1Q969G3 411 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 SMARCD1Q96GM5 515 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 GZF1Q9H116 711 aaPredicted RBP17.82■□□□□ 0.44
USB1-211ENST00000565662 CHRDQ9H2X0 955 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 CYP3A43Q9HB55 503 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 CRTAC1Q9NQ79 661 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 PCDHGA2Q9Y5H1 932 aa17.82■□□□□ 0.44
USB1-211ENST00000565662 HELZP42694 1942 aaKnown RBP17.81■□□□□ 0.44
USB1-211ENST00000565662 ASS1P00966 412 aaKnown RBP17.81■□□□□ 0.44
USB1-211ENST00000565662 CKMP06732 381 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 PDGFRBP09619 1106 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 PRR29P0C7W0 189 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 BDNFP23560 247 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 LMO2P25791 158 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 MCCD1P59942 119 aaPredicted RBP17.81■□□□□ 0.44
USB1-211ENST00000565662 ZCWPW2Q504Y3 356 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 STXBP5Q5T5C0 1151 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 KRT39Q6A163 491 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 FOXR2Q6PJQ5 311 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 SV2AQ7L0J3 742 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 MRPL45Q9BRJ2 306 aaKnown RBP17.81■□□□□ 0.44
USB1-211ENST00000565662 SLC46A2Q9BY10 475 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 GDPD2Q9HCC8 539 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 TMEM8AQ9HCN3 771 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 DMAP1Q9NPF5 467 aaPredicted RBP17.81■□□□□ 0.44
USB1-211ENST00000565662 FANCMQ8IYD8 2048 aa17.81■□□□□ 0.44
USB1-211ENST00000565662 PSMA7O14818 248 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 PRAMEF12O95522 483 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 CTHP32929 405 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 CASP4P49662 377 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 FKBP3Q00688 224 aaKnown RBP17.8■□□□□ 0.44
USB1-211ENST00000565662 NR1H3Q13133 447 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 POTEHQ6S545 545 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 TMEM150AQ86TG1 271 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 CPA6Q8N4T0 437 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 ST13P5Q8NFI4 369 aaPredicted RBP17.8■□□□□ 0.44
USB1-211ENST00000565662 SPATA20Q8TB22 786 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 ATP2A3Q93084 1043 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 PNPLA8Q9NP80 782 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 FAM86C1Q9NVL1 165 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 ARHGAP26Q9UNA1 814 aa17.8■□□□□ 0.44
USB1-211ENST00000565662 PRR23AA6NEV1 266 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms