RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SRSF5Q13243 272 aaKnown RBP18.32■□□□□ 0.52
CLN3-216ENST00000565316 MTF1Q14872 753 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 MAPRE1Q15691 268 aaKnown RBP18.32■□□□□ 0.52
CLN3-216ENST00000565316 FAM26FQ5R3K3 315 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 HEATR6Q6AI08 1181 aaKnown RBP18.32■□□□□ 0.52
CLN3-216ENST00000565316 SCN4BQ8IWT1 228 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 OSCP1Q8WVF1 389 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 DHX58Q96C10 678 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 CYP2S1Q96SQ9 504 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 MAGEF1Q9HAY2 307 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 MAGEC2Q9UBF1 373 aaPredicted RBP18.32■□□□□ 0.52
CLN3-216ENST00000565316 UBE4BO95155 1302 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 CCDC163A0A0D9SF12 145 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 ATG13O75143 517 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 FAM163BP0C2L3 166 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 TCF3P15923 654 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 USP4Q13107 963 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 PSMD6Q15008 389 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 SNRNP35Q16560 246 aaKnown RBP18.31■□□□□ 0.52
CLN3-216ENST00000565316 SCFD1Q8WVM8 642 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 SNX21Q969T3 373 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 MYLPFQ96A32 169 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 RTKNQ9BST9 563 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 FBRSL1Q9HCM7 1045 aaKnown RBP18.31■□□□□ 0.52
CLN3-216ENST00000565316 TRPC7Q9HCX4 862 aa18.31■□□□□ 0.52
CLN3-216ENST00000565316 CDV3Q9UKY7 258 aaKnown RBP18.31■□□□□ 0.52
CLN3-216ENST00000565316 TACC1O75410 805 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 CST3P01034 146 aaPredicted RBP18.3■□□□□ 0.52
CLN3-216ENST00000565316 EGFP01133 1207 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 DRD1P21728 446 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 GJA4P35212 333 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 GALK1P51570 392 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 PSMC1P62191 440 aaKnown RBP18.3■□□□□ 0.52
CLN3-216ENST00000565316 CYP24A1Q07973 514 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 CSRP2Q16527 193 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 BMT2Q1RMZ1 405 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 UNC13DQ70J99 1090 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 CPA6Q8N4T0 437 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 FSIP1Q8NA03 581 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 MYCBPAPQ8TBZ2 947 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 CGRRF1Q99675 332 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 GZF1Q9H116 711 aaPredicted RBP18.3■□□□□ 0.52
CLN3-216ENST00000565316 ECT2Q9H8V3 914 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 SEMA4GQ9NTN9 838 aa18.3■□□□□ 0.52
CLN3-216ENST00000565316 DUS2Q9NX74 493 aaKnown RBP18.3■□□□□ 0.52
CLN3-216ENST00000565316 C2orf78A6NCI8 922 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 CKMP06732 381 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 PDGFRBP09619 1106 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 PDIA4P13667 645 aaKnown RBP18.29■□□□□ 0.52
CLN3-216ENST00000565316 PFKLP17858 780 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 BDNFP23560 247 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 EML3Q32P44 896 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.29■□□□□ 0.52
CLN3-216ENST00000565316 C12orf56Q8IXR9 622 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 FAM160A2Q8N612 972 aaPredicted RBP18.29■□□□□ 0.52
CLN3-216ENST00000565316 ARL14EPQ8N8R7 260 aaPredicted RBP18.29■□□□□ 0.52
CLN3-216ENST00000565316 XXYLT1Q8NBI6 393 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 RDH13Q8NBN7 331 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 ATP2A3Q93084 1043 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 P2RY13Q9BPV8 354 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 MRPL45Q9BRJ2 306 aaKnown RBP18.29■□□□□ 0.52
CLN3-216ENST00000565316 TTLL2Q9BWV7 592 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 CGNQ9P2M7 1197 aaKnown RBP18.29■□□□□ 0.52
CLN3-216ENST00000565316 ARHGAP26Q9UNA1 814 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 NME7Q9Y5B8 376 aa18.29■□□□□ 0.52
CLN3-216ENST00000565316 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.29■□□□□ 0.52
CLN3-216ENST00000565316 POLR2DO15514 142 aaKnown RBP18.28■□□□□ 0.52
CLN3-216ENST00000565316 RNF40O75150 1001 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 STAU1O95793 577 aaKnown RBP18.28■□□□□ 0.52
CLN3-216ENST00000565316 DLATP10515 647 aaKnown RBP18.28■□□□□ 0.52
CLN3-216ENST00000565316 HDCP19113 662 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 GNL1P36915 607 aaPredicted RBP18.28■□□□□ 0.52
CLN3-216ENST00000565316 PDE6CP51160 858 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 USP46P62068 366 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 FBXO43Q4G163 708 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 NAIF1Q69YI7 327 aaPredicted RBP18.28■□□□□ 0.52
CLN3-216ENST00000565316 DENND5BQ6ZUT9 1274 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 CEP68Q76N32 757 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 CAMKK1Q8N5S9 505 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 NETO1Q8TDF5 533 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 SH3RF2Q8TEC5 729 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 GAB3Q8WWW8 586 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 ZNF516Q92618 1163 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 EXOC4Q96A65 974 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 PCED1BQ96HM7 432 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 C8orf48Q96LL4 319 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 FNBP1Q96RU3 617 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 MMS19Q96T76 1030 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 ZNF638Q14966 1978 aaKnown RBP18.28■□□□□ 0.52
CLN3-216ENST00000565316 EPG5Q9HCE0 2579 aa18.28■□□□□ 0.52
CLN3-216ENST00000565316 PVALEFA0A1B0GWK0 134 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 CLIC2O15247 247 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 FOXD2O60548 495 aaPredicted RBP18.27■□□□□ 0.52
CLN3-216ENST00000565316 TNNI1P19237 187 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 GRIK1P39086 918 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 IFNAR2P48551 515 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 CYP2J2P51589 502 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 NOP14P78316 857 aaKnown RBP18.27■□□□□ 0.52
CLN3-216ENST00000565316 CYP27A1Q02318 531 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 KCNB1Q14721 858 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms