RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 ARHGAP20Q9P2F6 1191 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 DPP7Q9UHL4 492 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 FBXW11Q9UKB1 542 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 CEP83Q9Y592 693 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 M0QYV0 167 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 CLDN5O00501 218 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 AP1G2O75843 785 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 VNN2O95498 520 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 LSM8O95777 96 aaKnown RBP21.84■■□□□ 1.09
CLN3-212ENST00000564574 MMEP08473 750 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 HAPLN1P10915 354 aaPredicted RBP21.84■■□□□ 1.09
CLN3-212ENST00000564574 NPR3P17342 541 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 CHRNB2P17787 502 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 BDNFP23560 247 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 PKDCCQ504Y2 493 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 ELMSAN1Q6PJG2 1045 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 CYP26C1Q6V0L0 522 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 CCDC149Q6ZUS6 474 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 ZNF571Q7Z3V5 609 aaPredicted RBP21.84■■□□□ 1.09
CLN3-212ENST00000564574 DEFB123Q8N688 67 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 ATAD1Q8NBU5 361 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 CEP295NLQ96MC4 621 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 CSNK1G1Q9HCP0 422 aa21.84■■□□□ 1.09
CLN3-212ENST00000564574 MYO7AQ13402 2215 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 TRIM66O15016 1216 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 CYP2F1P24903 491 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 CDH5P33151 784 aaPredicted RBP21.83■■□□□ 1.09
CLN3-212ENST00000564574 DUSP4Q13115 394 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 CLEC20AQ6ZU45 233 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 Q7L0L9 218 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 ADGRD2Q7Z7M1 963 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 TTC30AQ86WT1 665 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 TMTC1Q8IUR5 882 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 TMEM35BQ8NCS4 154 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 SLC22A17Q8WUG5 538 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 C8orf48Q96LL4 319 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 GAS2L1Q99501 681 aaPredicted RBP21.83■■□□□ 1.09
CLN3-212ENST00000564574 UBXN6Q9BZV1 441 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 PLEKHA4Q9H4M7 779 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 CYP4F11Q9HBI6 524 aa21.83■■□□□ 1.09
CLN3-212ENST00000564574 DMAP1Q9NPF5 467 aaPredicted RBP21.83■■□□□ 1.09
CLN3-212ENST00000564574 CYP1A1P04798 512 aaPredicted RBP21.82■■□□□ 1.08
CLN3-212ENST00000564574 PTMAP06454 111 aaKnown RBP21.82■■□□□ 1.08
CLN3-212ENST00000564574 NRIP1P48552 1158 aa21.82■■□□□ 1.08
CLN3-212ENST00000564574 RPL10AP62906 217 aaKnown RBP21.82■■□□□ 1.08
CLN3-212ENST00000564574 PLD1Q13393 1074 aa21.82■■□□□ 1.08
CLN3-212ENST00000564574 MGAT5BQ3V5L5 792 aa21.82■■□□□ 1.08
CLN3-212ENST00000564574 PPP1R2P3Q6NXS1 205 aa21.82■■□□□ 1.08
CLN3-212ENST00000564574 DENND1BQ6P3S1 775 aa21.82■■□□□ 1.08
CLN3-212ENST00000564574 KREMEN2Q8NCW0 462 aa21.82■■□□□ 1.08
CLN3-212ENST00000564574 CCDC112Q8NEF3 446 aa21.82■■□□□ 1.08
CLN3-212ENST00000564574 SMOQ99835 787 aa21.82■■□□□ 1.08
CLN3-212ENST00000564574 BAG1Q99933 345 aaPredicted RBP21.82■■□□□ 1.08
CLN3-212ENST00000564574 PNPLA8Q9NP80 782 aa21.82■■□□□ 1.08
CLN3-212ENST00000564574 CHD9Q3L8U1 2897 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 XPO1O14980 1071 aaKnown RBP21.81■■□□□ 1.08
CLN3-212ENST00000564574 NRDCO43847 1150 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 SEC24AO95486 1093 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 PLEKP08567 350 aaPredicted RBP21.81■■□□□ 1.08
CLN3-212ENST00000564574 CFHP08603 1231 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 EIF4A3P38919 411 aaKnown RBP21.81■■□□□ 1.08
CLN3-212ENST00000564574 GRIK1P39086 918 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 GPD2P43304 727 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 PDE4CQ08493 712 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 LIN9Q5TKA1 542 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 RBM23Q86U06 439 aaKnown RBP21.81■■□□□ 1.08
CLN3-212ENST00000564574 OLIG1Q8TAK6 271 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 UBA3Q8TBC4 463 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 STK32AQ8WU08 396 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 SECISBP2LQ93073 1101 aaKnown RBP21.81■■□□□ 1.08
CLN3-212ENST00000564574 CCDC42Q96M95 316 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 NOX5Q96PH1 765 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 CHP1Q99653 195 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 SEPT5Q99719 369 aaPredicted RBP21.81■■□□□ 1.08
CLN3-212ENST00000564574 RHOBTB2Q9BYZ6 727 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 CRISPLD1Q9H336 500 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 DEF6Q9H4E7 631 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 NHEJ1Q9H9Q4 299 aaPredicted RBP21.81■■□□□ 1.08
CLN3-212ENST00000564574 SEPT11Q9NVA2 429 aaKnown RBP21.81■■□□□ 1.08
CLN3-212ENST00000564574 SLC27A5Q9Y2P5 690 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 MTCH2Q9Y6C9 303 aa21.81■■□□□ 1.08
CLN3-212ENST00000564574 GREB1Q4ZG55 1949 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 PRRG1O14668 218 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 PER2O15055 1255 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 GZMAP12544 262 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 SSTR3P32745 418 aaPredicted RBP21.8■■□□□ 1.08
CLN3-212ENST00000564574 PLA2G4AP47712 749 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 MAP3K7CLP57077 242 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 NOMO3P69849 1222 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 CLEC16AQ2KHT3 1053 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 ASTE1Q2TB18 679 aaPredicted RBP21.8■■□□□ 1.08
CLN3-212ENST00000564574 TCEAL5Q5H9L2 206 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 PASD1Q8IV76 773 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 SCN4BQ8IWT1 228 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 LRRC8AQ8IWT6 810 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 CCDC170Q8IYT3 715 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 ZMIZ2Q8NF64 920 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 SLC30A5Q8TAD4 765 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 SLC35F5Q8WV83 523 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 SPATA17Q96L03 361 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms