RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 STRIP2Q9ULQ0 834 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 SNX9Q9Y5X1 595 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 BRWD1Q9NSI6 2320 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 KPNA7A9QM74 516 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 CEP104O60308 925 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 HUS1O60921 280 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 ZNF623O75123 536 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 THP07101 528 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 PAX3P23760 479 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 BRD2P25440 801 aaKnown RBP9.45□□□□□ -0.9
VPS39-207ENST00000563692 CXCR5P32302 372 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 CDH5P33151 784 aaPredicted RBP9.45□□□□□ -0.9
VPS39-207ENST00000563692 RAP1GAPP47736 663 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 TAF6P49848 677 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 GUCY2FP51841 1108 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 RAD23BP54727 409 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 NOMO3P69849 1222 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 INCA1Q0VD86 236 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 HYAL1Q12794 435 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 ELF2Q15723 593 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 SGO2Q562F6 1265 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 CLLU1OSQ5K130 101 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 SCARA3Q6AZY7 606 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 KCNT2Q6UVM3 1135 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 ZNF572Q7Z3I7 529 aaPredicted RBP9.45□□□□□ -0.9
VPS39-207ENST00000563692 MRPL10Q7Z7H8 261 aaKnown RBP9.45□□□□□ -0.9
VPS39-207ENST00000563692 PASD1Q8IV76 773 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 PDCL2Q8N4E4 241 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 ACTRT1Q8TDG2 376 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 COG1Q8WTW3 980 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 TSC1Q92574 1164 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 PSMB7Q99436 277 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 CDCA3Q99618 268 aaPredicted RBP9.45□□□□□ -0.9
VPS39-207ENST00000563692 RNF39Q9H2S5 420 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 SNX25Q9H3E2 840 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 SMYD3Q9H7B4 428 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 WDR35Q9P2L0 1181 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 LZTS1Q9Y250 596 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 INPP5FQ9Y2H2 1132 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.45□□□□□ -0.9
VPS39-207ENST00000563692 RALGAPA2Q2PPJ7 1873 aa9.45□□□□□ -0.9
VPS39-207ENST00000563692 MYO7AQ13402 2215 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 CCDC66A2RUB6 948 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 GRXCR2A6NFK2 248 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 TMEM110-MUSTN1A8MSY1 372 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 SPOPO43791 374 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 CALCAP01258 141 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 MMP8P22894 467 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 RRM1P23921 792 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 DNAJB1P25685 340 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 LRPAP1P30533 357 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 RPL9P32969 192 aaKnown RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 CA8P35219 290 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 IRS1P35568 1242 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 GNL1P36915 607 aaPredicted RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 NRIP1P48552 1158 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 DNA2P51530 1060 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 NDST1P52848 882 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 PLCB3Q01970 1234 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 NAA30Q147X3 362 aaPredicted RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 COL19A1Q14993 1142 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 PPP2R5EQ16537 467 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 CTC1Q2NKJ3 1217 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 GLE1Q53GS7 698 aaKnown RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 NOMO2Q5JPE7 1267 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 GLRA4Q5JXX5 417 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 PLPP4Q5VZY2 271 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 MON1BQ7L1V2 547 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 RBM23Q86U06 439 aaKnown RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 ZNF598Q86UK7 904 aaKnown RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 MMGT1Q8N4V1 131 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 EFHBQ8N7U6 833 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 SLC4A11Q8NBS3 891 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 LRRN4CLQ8ND94 238 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 APPL2Q8NEU8 664 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 SPATA4Q8NEY3 305 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 OR6B3Q8NGW1 331 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 FEZF2Q8TBJ5 459 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 C18orf25Q96B23 403 aaPredicted RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 TMEM169Q96HH4 297 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 FAM193BQ96PV7 902 aaPredicted RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 TCF25Q9BQ70 676 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 C11orf70Q9BRQ4 267 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 C1QTNF1Q9BXJ1 281 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 SDCBP2Q9H190 292 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 CARD9Q9H257 536 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 CWH43Q9H720 699 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 SYNCQ9H7C4 482 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 NGRNQ9NPE2 291 aaKnown RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 RNF19AQ9NV58 838 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 GDAP2Q9NXN4 497 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 TUBGCP4Q9UGJ1 667 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 IP6K2Q9UHH9 426 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 CD207Q9UJ71 328 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 PACSIN2Q9UNF0 486 aaPredicted RBP9.44□□□□□ -0.9
VPS39-207ENST00000563692 TRANK1O15050 2925 aa9.44□□□□□ -0.9
VPS39-207ENST00000563692 TARSL2A2RTX5 802 aaKnown RBP9.43□□□□□ -0.9
VPS39-207ENST00000563692 A8MXQ7 604 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 PGRMC1O00264 195 aaKnown RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms