RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 TSPY1Q01534 308 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 CTXN3Q4LDR2 81 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 LIN9Q5TKA1 542 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 PLEKHA7Q6IQ23 1121 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 CLEC20AQ6ZU45 233 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 FAM35AQ86V20 835 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 FIBCD1Q8N539 461 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 TPCN2Q8NHX9 752 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 SP7Q8TDD2 431 aaPredicted RBP10.74□□□□□ -0.69
SMG1-208ENST00000563448 C18orf8Q96DM3 657 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 SLC4A5Q9BY07 1137 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 ZCWPW1Q9H0M4 648 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 CTTNBP2NLQ9P2B4 639 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 PCDHGC5Q9Y5F6 944 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 GRID2IPA4D2P6 1211 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 PIK3R2O00459 728 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 PALMO75781 387 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 MTA2O94776 668 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 MAGEA10P43363 369 aaPredicted RBP10.74□□□□□ -0.69
SMG1-208ENST00000563448 RPL34P49207 117 aaKnown RBP10.74□□□□□ -0.69
SMG1-208ENST00000563448 CACNA2D1P54289 1103 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 HADHBP55084 474 aaKnown RBP10.74□□□□□ -0.69
SMG1-208ENST00000563448 GSCP56915 257 aaPredicted RBP10.74□□□□□ -0.69
SMG1-208ENST00000563448 DNTTIP2Q5QJE6 756 aaKnown RBP10.74□□□□□ -0.69
SMG1-208ENST00000563448 C9orf50Q5SZB4 431 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 ZNF280DQ6N043 979 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 XYLT1Q86Y38 959 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 TRIM58Q8NG06 486 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 ZNF564Q8TBZ8 553 aaPredicted RBP10.74□□□□□ -0.69
SMG1-208ENST00000563448 STK32AQ8WU08 396 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 ZNF592Q92610 1267 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 TMEM169Q96HH4 297 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 RAD9AQ99638 391 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 SMOQ99835 787 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 TTPALQ9BTX7 342 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 RHOBTB2Q9BYZ6 727 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 MTIF3Q9H2K0 278 aaKnown RBP10.74□□□□□ -0.69
SMG1-208ENST00000563448 CHST7Q9NS84 486 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 KRT82Q9NSB4 513 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 TMEM30AQ9NV96 361 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 SPG21Q9NZD8 308 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 UVRAGQ9P2Y5 699 aa10.74□□□□□ -0.69
SMG1-208ENST00000563448 LCHNA4D1U4 455 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 E5RJQ4 531 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 XPO1O14980 1071 aaKnown RBP10.73□□□□□ -0.69
SMG1-208ENST00000563448 GJB6O95452 261 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 SOD2P04179 222 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 NPR3P17342 541 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 CASQ1P31415 396 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 PLA2G4AP47712 749 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 RABGGTBP53611 331 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 MAMLD1Q13495 774 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 USP41Q3LFD5 358 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 SLC39A12Q504Y0 691 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 PRSS55Q6UWB4 352 aaPredicted RBP10.73□□□□□ -0.69
SMG1-208ENST00000563448 RSPO2Q6UXX9 243 aaPredicted RBP10.73□□□□□ -0.69
SMG1-208ENST00000563448 TMEM110Q86TL2 294 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 DCP1BQ8IZD4 617 aaKnown RBP10.73□□□□□ -0.69
SMG1-208ENST00000563448 MSANTD4Q8NCY6 345 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 ZMIZ2Q8NF64 920 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 CLP1Q92989 425 aaKnown RBP10.73□□□□□ -0.69
SMG1-208ENST00000563448 BTBD6Q96KE9 485 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 HERC2P3Q9BVR0 1158 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 ST7Q9NRC1 585 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 STRIP2Q9ULQ0 834 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 NR2E3Q9Y5X4 410 aa10.73□□□□□ -0.69
SMG1-208ENST00000563448 CARNS1A5YM72 827 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 OR6C75A6NL08 312 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 H7C4K7 107 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 TLL1O43897 1013 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 BUB1BO60566 1050 aaPredicted RBP10.72□□□□□ -0.69
SMG1-208ENST00000563448 AP1G2O75843 785 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 FAM200BP0CF97 657 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 MAP3K7CLP57077 242 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 ZNF268Q14587 947 aaPredicted RBP10.72□□□□□ -0.69
SMG1-208ENST00000563448 SHHQ15465 462 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 MAPRE1Q15691 268 aaKnown RBP10.72□□□□□ -0.69
SMG1-208ENST00000563448 IFI16Q16666 785 aaKnown RBP10.72□□□□□ -0.69
SMG1-208ENST00000563448 PPP1R15BQ5SWA1 713 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 FAM183BPQ6ZVS7 135 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 ANKS3Q6ZW76 656 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 SLFN11Q7Z7L1 901 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 DDX53Q86TM3 631 aaKnown RBP10.72□□□□□ -0.69
SMG1-208ENST00000563448 PIGZQ86VD9 579 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 LRRC57Q8N9N7 239 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 C3orf20Q8ND61 904 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 IPO4Q8TEX9 1081 aaKnown RBP10.72□□□□□ -0.69
SMG1-208ENST00000563448 MCRS1Q96EZ8 462 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 SMARCD1Q96GM5 515 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 ALS2CR12Q96Q35 445 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 KCNK16Q96T55 309 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 GOLPH3Q9H4A6 298 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 SYNCQ9H7C4 482 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 CSNK1G1Q9HCP0 422 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 AAASQ9NRG9 546 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 WDR35Q9P2L0 1181 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 PCDHB12Q9Y5F1 795 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 GOLGA8SH3BPF8 625 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 BDNFP23560 247 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 DSG1Q02413 1049 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms