RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 RBP5P82980 135 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 MYL7Q01449 175 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 RUNX3Q13761 415 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 STXBP4Q6ZWJ1 553 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 EPM2AIP1Q7L775 607 aaPredicted RBP20.36■□□□□ 0.85
VPS35-202ENST00000561713 MAB21L3Q8N8X9 362 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 RDH13Q8NBN7 331 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 LOXL4Q96JB6 756 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 SMOC1Q9H4F8 434 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 EBF3Q9H4W6 596 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 AGPAT3Q9NRZ7 376 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 GTF3C4Q9UKN8 822 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 ANGPTL2Q9UKU9 493 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 SLC8A2Q9UPR5 921 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 MYH10P35580 1976 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 CEP295Q9C0D2 2601 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 CCDC163A0A0D9SF12 145 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 ATP2C2O75185 946 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 TNNC2P02585 160 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 CCDC192P0DO97 292 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 DLATP10515 647 aaKnown RBP20.35■□□□□ 0.85
VPS35-202ENST00000561713 PMLP29590 882 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 GRSF1Q12849 480 aaKnown RBP eCLIP20.35■□□□□ 0.85
VPS35-202ENST00000561713 NFE2Q16621 373 aaPredicted RBP20.35■□□□□ 0.85
VPS35-202ENST00000561713 SOWAHAQ2M3V2 549 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 TXNDC8Q6A555 127 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 IQUBQ8NA54 791 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 TTC16Q8NEE8 873 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 KBTBD7Q8WVZ9 684 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 USP13Q92995 863 aaPredicted RBP20.35■□□□□ 0.85
VPS35-202ENST00000561713 HPDLQ96IR7 371 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 CUEDC2Q9H467 287 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 FBRSL1Q9HCM7 1045 aaKnown RBP20.35■□□□□ 0.85
VPS35-202ENST00000561713 GDAP2Q9NXN4 497 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 SPAG17Q6Q759 2223 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 EML5Q05BV3 1969 aa20.35■□□□□ 0.85
VPS35-202ENST00000561713 ZNF233A6NK53 670 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 TRDMT1O14717 391 aaKnown RBP20.34■□□□□ 0.85
VPS35-202ENST00000561713 EIF3DO15371 548 aaKnown RBP eCLIP20.34■□□□□ 0.85
VPS35-202ENST00000561713 TGFB1I1O43294 461 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 ATG13O75143 517 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 EGFP01133 1207 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 F11P03951 625 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 AVPR1AP37288 418 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 AFMP43652 599 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 ME1P48163 572 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 SMARCB1Q12824 385 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 PLA2G2CQ5R387 149 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 STPG1Q5TH74 334 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 SCN4BQ8IWT1 228 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 TMEM86AQ8N2M4 240 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 TOP6BLQ8N6T0 577 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 LEO1Q8WVC0 666 aaPredicted RBP20.34■□□□□ 0.85
VPS35-202ENST00000561713 SCFD1Q8WVM8 642 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 MYLPFQ96A32 169 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 SYT15Q9BQS2 421 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 ACBD6Q9BR61 282 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 PCDHA7Q9UN72 937 aa20.34■□□□□ 0.85
VPS35-202ENST00000561713 RNF40O75150 1001 aa20.33■□□□□ 0.85
VPS35-202ENST00000561713 ARSAP15289 507 aa20.33■□□□□ 0.85
VPS35-202ENST00000561713 DNM1Q05193 864 aaKnown RBP20.33■□□□□ 0.85
VPS35-202ENST00000561713 CUL4BQ13620 913 aa20.33■□□□□ 0.85
VPS35-202ENST00000561713 SNRNP35Q16560 246 aaKnown RBP20.33■□□□□ 0.85
VPS35-202ENST00000561713 NAIF1Q69YI7 327 aaPredicted RBP20.33■□□□□ 0.85
VPS35-202ENST00000561713 UNC13DQ70J99 1090 aa20.33■□□□□ 0.85
VPS35-202ENST00000561713 SPATA2LQ8IUW3 424 aaPredicted RBP20.33■□□□□ 0.85
VPS35-202ENST00000561713 CCDC127Q96BQ5 260 aa20.33■□□□□ 0.85
VPS35-202ENST00000561713 C7orf25Q9BPX7 421 aa20.33■□□□□ 0.85
VPS35-202ENST00000561713 LRRC27Q9C0I9 530 aa20.33■□□□□ 0.85
VPS35-202ENST00000561713 TRPC7Q9HCX4 862 aa20.33■□□□□ 0.85
VPS35-202ENST00000561713 SLC39A2Q9NP94 309 aa20.33■□□□□ 0.85
VPS35-202ENST00000561713 NME7Q9Y5B8 376 aa20.33■□□□□ 0.85
VPS35-202ENST00000561713 UBE4BO95155 1302 aa20.32■□□□□ 0.84
VPS35-202ENST00000561713 KIAA0391O15091 583 aaKnown RBP20.32■□□□□ 0.84
VPS35-202ENST00000561713 LMO2P25791 158 aa20.32■□□□□ 0.84
VPS35-202ENST00000561713 AMPD3Q01432 767 aa20.32■□□□□ 0.84
VPS35-202ENST00000561713 EHHADHQ08426 723 aa20.32■□□□□ 0.84
VPS35-202ENST00000561713 RESP18Q5W5W9 173 aa20.32■□□□□ 0.84
VPS35-202ENST00000561713 WDR49Q8IV35 697 aa20.32■□□□□ 0.84
VPS35-202ENST00000561713 ZNF507Q8TCN5 953 aa20.32■□□□□ 0.84
VPS35-202ENST00000561713 ZC3H10Q96K80 434 aaKnown RBP20.32■□□□□ 0.84
VPS35-202ENST00000561713 HHIPQ96QV1 700 aa20.32■□□□□ 0.84
VPS35-202ENST00000561713 CRTAC1Q9NQ79 661 aa20.32■□□□□ 0.84
VPS35-202ENST00000561713 TDP1Q9NUW8 608 aa20.32■□□□□ 0.84
VPS35-202ENST00000561713 R3HCC1Q9Y3T6 440 aaKnown RBP20.32■□□□□ 0.84
VPS35-202ENST00000561713 WDFY3Q8IZQ1 3526 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 GABRDO14764 452 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 NOL4O94818 638 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 PDGFRBP09619 1106 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 CSH1P0DML2 217 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 CSH2P0DML3 217 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 PCSK1P29120 753 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 MPLP40238 635 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 CASP4P49662 377 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 GALK1P51570 392 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 CYP24A1Q07973 514 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 MYO1EQ12965 1108 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 DUOXA2Q1HG44 320 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 TCEAL6Q6IPX3 200 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 CNNM4Q6P4Q7 775 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms