RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 LMNB2Q03252 620 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 C1QBPQ07021 282 aaKnown RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 MAPK6Q16659 721 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 RNASEH2BQ5TBB1 312 aaKnown RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 CENPUQ71F23 418 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 ZBTB33Q86T24 672 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 FAM13CQ8NE31 585 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 TBC1D10AQ9BXI6 508 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 K7ERI5 159 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 PRPF4O43172 522 aaKnown RBP eCLIP11.87□□□□□ -0.512e-7■■■□□ 14.8
CUX1-218ENST00000560541 ENTPD5O75356 428 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 EGFRP00533 1210 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 WEE2P0C1S8 567 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 TNFSF9P41273 254 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 VCPP55072 806 aaKnown RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 HIF1AQ16665 826 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 CCDC92Q53HC0 331 aaPredicted RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 PLEKHG4Q58EX7 1191 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 TRIM72Q6ZMU5 477 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 MTDHQ86UE4 582 aaKnown RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 LCA5Q86VQ0 697 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 RHPN2Q8IUC4 686 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 TTC8Q8TAM2 541 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 DEPTORQ8TB45 409 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 TTC25Q96NG3 672 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 LRMDAQ9H2I8 198 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 PDLIM7Q9NR12 457 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 SLC9A2Q9UBY0 812 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 TJP2Q9UDY2 1190 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 AGTPBP1Q9UPW5 1226 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 MYH9P35579 1960 aaKnown RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 CLUHO75153 1309 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 hCG_1818297A0A087WSY0 165 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 SKIV2L2P42285 1042 aaKnown RBP11.86□□□□□ -0.51
CUX1-218ENST00000560541 CLCN2P51788 898 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 CLDN10P78369 228 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 MORF4L2Q15014 288 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 SEPT7Q16181 437 aaKnown RBP11.86□□□□□ -0.51
CUX1-218ENST00000560541 FNBP1LQ5T0N5 605 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 FOXB2Q5VYV0 432 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 SNRNP48Q6IEG0 339 aaKnown RBP11.86□□□□□ -0.51
CUX1-218ENST00000560541 CCNJLQ8IV13 435 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 SUPT20HQ8NEM7 779 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 C10orf82Q8WW14 230 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 LPAR1Q92633 364 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 ZNF75CPQ92670 426 aaPredicted RBP11.86□□□□□ -0.51
CUX1-218ENST00000560541 SLC7A6OSQ96CW6 309 aaPredicted RBP11.86□□□□□ -0.51
CUX1-218ENST00000560541 PSMC3IPQ9P2W1 217 aaPredicted RBP11.86□□□□□ -0.51
CUX1-218ENST00000560541 A0A0G2JND7 137 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 TCRBV7S3A2A0A539 114 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 DYTNA2CJ06 578 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 VWA5AO00534 786 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 TYROBPO43914 113 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 GSTT1P30711 240 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 NR1H3Q13133 447 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 OASLQ15646 514 aaKnown RBP11.86□□□□□ -0.51
CUX1-218ENST00000560541 TFDP3Q5H9I0 405 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 RASIP1Q5U651 963 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 GPAT2Q6NUI2 795 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 NLRP9Q7RTR0 991 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 CCDC125Q86Z20 511 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 PYROXD1Q8WU10 500 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 SLC35B4Q969S0 331 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 MTMR12Q9C0I1 747 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 SLC17A7Q9P2U7 560 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 TUBGCP4Q9UGJ1 667 aa11.86□□□□□ -0.51
CUX1-218ENST00000560541 SMG5Q9UPR3 1016 aaKnown RBP11.86□□□□□ -0.51
CUX1-218ENST00000560541 ATP2A1O14983 1001 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 ALOX15BO15296 676 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 MAGEB2O15479 319 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 RAD23BP54727 409 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 MRPS35P82673 323 aaKnown RBP11.85□□□□□ -0.51
CUX1-218ENST00000560541 OTUD4Q01804 1114 aaKnown RBP11.85□□□□□ -0.51
CUX1-218ENST00000560541 GHRHRQ02643 423 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 ORC1Q13415 861 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 BBS9Q3SYG4 887 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 C3orf62Q6ZUJ4 267 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 ACTL9Q8TC94 416 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 VCPIP1Q96JH7 1222 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 NUDCD1Q96RS6 583 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 TCHPQ9BT92 498 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 PGAP2Q9UHJ9 254 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 ZFP69BQ9UJL9 534 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 PAIP2BQ9ULR5 123 aaKnown RBP11.85□□□□□ -0.51
CUX1-218ENST00000560541 COL4A5P29400 1685 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 PEX11AO75192 247 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 DCTN3O75935 186 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 CD48P09326 243 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 SPATA31D3P0C874 917 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 CDKN2BP42772 138 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 SESN3P58005 492 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 MYL6P60660 151 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 SP2Q02086 613 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 SPATA31D4Q6ZUB0 917 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 TRIM50Q86XT4 487 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 TMEM130Q8N3G9 435 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 TEX9Q8N6V9 391 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 RFWD2Q8NHY2 731 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 TCP10LQ8TDR4 215 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 ZNF668Q96K58 619 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms