RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TRAPPC11Q7Z392 1133 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 CEP120Q8N960 986 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 ZBTB44Q8NCP5 570 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 ZSWIM2Q8NEG5 633 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 ATRIPQ8WXE1 791 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 CLDN23Q96B33 292 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 PANX2Q96RD6 677 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 NAA15Q9BXJ9 866 aaKnown RBP12.58□□□□□ -0.4
LDLR-212ENST00000560467 ZSCAN32Q9NX65 697 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 APEX2Q9UBZ4 518 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 ITGA11Q9UKX5 1188 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 SIK3Q9Y2K2 1263 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 BACE2Q9Y5Z0 518 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 NRG2O14511 850 aaPredicted RBP12.57□□□□□ -0.4
LDLR-212ENST00000560467 C4BPAP04003 597 aaKnown RBP12.57□□□□□ -0.4
LDLR-212ENST00000560467 SLC9A1P19634 815 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 FCARP24071 287 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 TBXAS1P24557 533 aaPredicted RBP12.57□□□□□ -0.4
LDLR-212ENST00000560467 STAT1P42224 750 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 MAGEA9P43362 315 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 ROR1Q01973 937 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 SOX4Q06945 474 aaPredicted RBP12.57□□□□□ -0.4
LDLR-212ENST00000560467 MTAPQ13126 283 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 RAPGEF1Q13905 1077 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 GRM2Q14416 872 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 SFMBT2Q5VUG0 894 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 JADE1Q6IE81 842 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 RRAGAQ7L523 313 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 VPS36Q86VN1 386 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 NELL1Q92832 810 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 TCEAL4Q96EI5 215 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 CNTNAP3BQ96NU0 1288 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 CNTNAP3Q9BZ76 1288 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 MTMR12Q9C0I1 747 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 EPC1Q9H2F5 836 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 UBE2TQ9NPD8 197 aaPredicted RBP12.57□□□□□ -0.4
LDLR-212ENST00000560467 PRMT8Q9NR22 394 aaPredicted RBP12.57□□□□□ -0.4
LDLR-212ENST00000560467 DPP3Q9NY33 737 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 GDE1Q9NZC3 331 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 FBXL5Q9UKA1 691 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 MYO6Q9UM54 1294 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 COQ4Q9Y3A0 265 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 BZW2Q9Y6E2 419 aaKnown RBP12.57□□□□□ -0.4
LDLR-212ENST00000560467 F5P12259 2224 aa12.57□□□□□ -0.4
LDLR-212ENST00000560467 TDRD15B5MCY1 1934 aaKnown RBP12.56□□□□□ -0.4
LDLR-212ENST00000560467 LILRB5O75023 590 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 MFAP3LO75121 409 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 HLA-DRAP01903 254 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 UCHL3P15374 230 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 KCNE1P15382 129 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 CYP3A5P20815 502 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 PAX3P23760 479 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 PNPLA4P41247 253 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 LRMPQ12912 555 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 TBX2Q13207 712 aaPredicted RBP12.56□□□□□ -0.4
LDLR-212ENST00000560467 FZD5Q13467 585 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 UPP1Q16831 310 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 FAM78AQ5JUQ0 283 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 LMBRD2Q68DH5 695 aaPredicted RBP12.56□□□□□ -0.4
LDLR-212ENST00000560467 SMYD5Q6GMV2 418 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 ZNF852Q6ZMS4 543 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 ANKS3Q6ZW76 656 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 TMTC1Q8IUR5 882 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 ZNF687Q8N1G0 1237 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 PPM1KQ8N3J5 372 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 TTC39CQ8N584 583 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 TAS1R2Q8TE23 839 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 SYN2Q92777 582 aaPredicted RBP12.56□□□□□ -0.4
LDLR-212ENST00000560467 JAKMIP2Q96AA8 810 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 FAXDC2Q96IV6 333 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 BAG1Q99933 345 aaPredicted RBP12.56□□□□□ -0.4
LDLR-212ENST00000560467 CORO1BQ9BR76 489 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 STK33Q9BYT3 514 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 DEF6Q9H4E7 631 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 NLRC4Q9NPP4 1024 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 CNTN3Q9P232 1028 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 DNAJC12Q9UKB3 198 aa12.56□□□□□ -0.4
LDLR-212ENST00000560467 NDRG2Q9UN36 371 aaKnown RBP12.56□□□□□ -0.4
LDLR-212ENST00000560467 SMIM28A0A1B0GU29 152 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 ARHGEF37A1IGU5 675 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 WDR27A2RRH5 827 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 PRRG1O14668 218 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 SEC24AO95486 1093 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 LRG1P02750 347 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 GYPCP04921 128 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 NFICP08651 508 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 TGM1P22735 817 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 USP8P40818 1118 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 CCR2P41597 374 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 RPS9P46781 194 aaKnown RBP12.55□□□□□ -0.4
LDLR-212ENST00000560467 ATXN1P54253 815 aaKnown RBP12.55□□□□□ -0.4
LDLR-212ENST00000560467 ADKP55263 362 aaKnown RBP12.55□□□□□ -0.4
LDLR-212ENST00000560467 ARPP19P56211 112 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 BPIFB4P59827 614 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 TNNC1P63316 161 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 KCNMA1Q12791 1236 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 ASIC2Q16515 512 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 LPAL2Q16609 132 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 ZNF699Q32M78 642 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 ZNF667Q5HYK9 610 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms