RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 DDR2Q16832 855 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 SLC5A9Q2M3M2 681 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 ARHGAP17Q68EM7 881 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 PHLDB3Q6NSJ2 640 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 ARHGEF19Q8IW93 802 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 DHX40Q8IX18 779 aaKnown RBP13.8□□□□□ -0.2
NEDD8-208ENST00000560427 NPAS3Q8IXF0 933 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 SLC4A11Q8NBS3 891 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 ITFG1Q8TB96 612 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 SLC2A14Q8TDB8 520 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 FGF13Q92913 245 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 NXPE3Q969Y0 559 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 CYFIP2Q96F07 1278 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 GCNAQ96QF7 691 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 CRACR2AQ9BSW2 395 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 MED10Q9BTT4 135 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 HSD3B7Q9H2F3 369 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 CSNK1G1Q9HCP0 422 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 KRT82Q9NSB4 513 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 TAB2Q9NYJ8 693 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 CNTN6Q9UQ52 1028 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 SLC38A8A6NNN8 435 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 LGALS16A8MUM7 142 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 F8VP50 259 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 PES1O00541 588 aaKnown RBP13.79□□□□□ -0.2
NEDD8-208ENST00000560427 MYL4P12829 197 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 LAMP2P13473 410 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 CCDC130P13994 396 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 HMGA1P17096 107 aaKnown RBP13.79□□□□□ -0.2
NEDD8-208ENST00000560427 SLC9A1P19634 815 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 DDX6P26196 483 aaKnown RBP eCLIP13.79□□□□□ -0.21e-6■■■□□ 15.5
NEDD8-208ENST00000560427 GPR15P49685 360 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 NTHL1P78549 312 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 ORC1Q13415 861 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 IQCB1Q15051 598 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 STILQ15468 1287 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 ZNF394Q53GI3 561 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 ARHGAP15Q53QZ3 475 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 DENND5BQ6ZUT9 1274 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 PAQR9Q6ZVX9 377 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 RRAGAQ7L523 313 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 C12orf29Q8N999 325 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 GIPC2Q8TF65 315 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 HEXIM2Q96MH2 286 aaKnown RBP13.79□□□□□ -0.2
NEDD8-208ENST00000560427 KREMEN1Q96MU8 473 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 NECAB3Q96P71 396 aaPredicted RBP13.79□□□□□ -0.2
NEDD8-208ENST00000560427 MYADMQ96S97 322 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 TTLL2Q9BWV7 592 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 COL25A1Q9BXS0 654 aaPredicted RBP13.79□□□□□ -0.2
NEDD8-208ENST00000560427 UBE2TQ9NPD8 197 aaPredicted RBP13.79□□□□□ -0.2
NEDD8-208ENST00000560427 FAM49BQ9NUQ9 324 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 COMMD8Q9NX08 183 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 IGSF9Q9P2J2 1179 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 PTPRDP23468 1912 aa13.79□□□□□ -0.2
NEDD8-208ENST00000560427 TTC28Q96AY4 2481 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 CLDN5O00501 218 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 AP1G2O75843 785 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 RTN3O95197 1032 aaPredicted RBP13.78□□□□□ -0.2
NEDD8-208ENST00000560427 VDRP11473 427 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 NPR3P17342 541 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 GABRR2P28476 465 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 CCR2P41597 374 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 PPP3CCP48454 512 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 ZNF132P52740 706 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 COPB1P53618 953 aaKnown RBP13.78□□□□□ -0.2
NEDD8-208ENST00000560427 SLC8A3P57103 927 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 MEA1Q16626 185 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 SGO2Q562F6 1265 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 TMEM270Q6UE05 265 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 MTSS1LQ765P7 747 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 HS6ST3Q8IZP7 471 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 RBBP8NLQ8NC74 664 aaPredicted RBP13.78□□□□□ -0.2
NEDD8-208ENST00000560427 KAT5Q92993 513 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 VPS16Q9H269 839 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 IL21Q9HBE4 155 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 ZNF334Q9HCZ1 680 aaPredicted RBP13.78□□□□□ -0.2
NEDD8-208ENST00000560427 SIX2Q9NPC8 291 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 PLCB1Q9NQ66 1216 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 PCDHB4Q9Y5E5 795 aa13.78□□□□□ -0.2
NEDD8-208ENST00000560427 A0A1W2PRU2 124 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 ANHXE9PGG2 379 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 GOLGA6L19H0YKK7 550 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 TNFRSF10AO00220 468 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 NCANO14594 1321 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 MOSPD3O75425 235 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 CEBPBP17676 345 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 PFKLP17858 780 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 SP100P23497 879 aaPredicted RBP13.77□□□□□ -0.21
NEDD8-208ENST00000560427 ADORA2BP29275 332 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 WEE1P30291 646 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 CDR1P51861 262 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 PPP1R26Q5T8A7 1209 aaPredicted RBP13.77□□□□□ -0.21
NEDD8-208ENST00000560427 SDHAF4Q5VUM1 108 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 CLEC20AQ6ZU45 233 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 GAREM2Q75VX8 874 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 RNF135Q8IUD6 432 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 NUP93Q8N1F7 819 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 PDZD8Q8NEN9 1154 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 SHKBP1Q8TBC3 707 aa13.77□□□□□ -0.21
NEDD8-208ENST00000560427 GPR152Q8TDT2 470 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms