RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 PATJQ8NI35 1801 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 C5orf42Q9H799 3197 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 DENND4AQ7Z401 1863 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 NOTCH4Q99466 2003 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 F8VP50 259 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 O00370 1275 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 CYP26A1O43174 497 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 MBTPS2O43462 519 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 BEST1O76090 585 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 VDRP11473 427 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 CLCN1P35523 988 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 USP8P40818 1118 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 TUFMP49411 452 aaKnown RBP23.1■■□□□ 1.29
SNX1-210ENST00000560260 SGO2Q562F6 1265 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 VSTM1Q6UX27 236 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 SCN4BQ8IWT1 228 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 GIPC2Q8TF65 315 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 SUSD6Q92537 303 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 SMG7Q92540 1137 aaKnown RBP23.1■■□□□ 1.29
SNX1-210ENST00000560260 SMARCD1Q96GM5 515 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 STK33Q9BYT3 514 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 THEGQ9P2T0 379 aa23.1■■□□□ 1.29
SNX1-210ENST00000560260 USP15Q9Y4E8 981 aaPredicted RBP23.1■■□□□ 1.29
SNX1-210ENST00000560260 NRG2O14511 850 aaPredicted RBP23.09■■□□□ 1.29
SNX1-210ENST00000560260 AP1G2O75843 785 aa23.09■■□□□ 1.29
SNX1-210ENST00000560260 SSTR3P32745 418 aaPredicted RBP23.09■■□□□ 1.29
SNX1-210ENST00000560260 NTHL1P78549 312 aa23.09■■□□□ 1.29
SNX1-210ENST00000560260 SMAD4Q13485 552 aaKnown RBP23.09■■□□□ 1.29
SNX1-210ENST00000560260 GOLGA7BQ2TAP0 167 aa23.09■■□□□ 1.29
SNX1-210ENST00000560260 TTC30AQ86WT1 665 aa23.09■■□□□ 1.29
SNX1-210ENST00000560260 BAP1Q92560 729 aa23.09■■□□□ 1.29
SNX1-210ENST00000560260 KCNK16Q96T55 309 aa23.09■■□□□ 1.29
SNX1-210ENST00000560260 DNMT3BQ9UBC3 853 aaKnown RBP23.09■■□□□ 1.29
SNX1-210ENST00000560260 TSPAN16Q9UKR8 245 aa23.09■■□□□ 1.29
SNX1-210ENST00000560260 DAAM1Q9Y4D1 1078 aa23.09■■□□□ 1.29
SNX1-210ENST00000560260 ATP8B3O60423 1300 aa23.09■■□□□ 1.29
SNX1-210ENST00000560260 ALDH1A3P47895 512 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 ITIH3Q06033 890 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 PLD1Q13393 1074 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 MTMR3Q13615 1198 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 CLEC20AQ6ZU45 233 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 TMC8Q8IU68 726 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 HS6ST3Q8IZP7 471 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 C8orf48Q96LL4 319 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 LRRC3Q9BY71 257 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 CSNK1G1Q9HCP0 422 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 ZNF334Q9HCZ1 680 aaPredicted RBP23.08■■□□□ 1.29
SNX1-210ENST00000560260 GREB1Q4ZG55 1949 aa23.08■■□□□ 1.29
SNX1-210ENST00000560260 CBFA2T2O43439 604 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 XYLBO75191 536 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 CFHP08603 1231 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 FAM200BP0CF97 657 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 TRIM21P19474 475 aaKnown RBP23.08■■□□□ 1.28
SNX1-210ENST00000560260 GNA15P30679 374 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 GRIK1P39086 918 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 EPHB3P54753 998 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 MAP3K7CLP57077 242 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 RPL10AP62906 217 aaKnown RBP23.08■■□□□ 1.28
SNX1-210ENST00000560260 PLCB2Q00722 1185 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 GRASPQ7Z6J2 395 aaPredicted RBP23.08■■□□□ 1.28
SNX1-210ENST00000560260 SLC47A2Q86VL8 602 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 DNAI2Q9GZS0 605 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 DMAP1Q9NPF5 467 aaPredicted RBP23.08■■□□□ 1.28
SNX1-210ENST00000560260 KIAA1257Q9ULG3 409 aa23.08■■□□□ 1.28
SNX1-210ENST00000560260 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.08■■□□□ 1.28
SNX1-210ENST00000560260 HHLA1C9JL84 531 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 TULP2O00295 520 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 TRIM66O15016 1216 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 GFPT2O94808 682 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 MICAL2O94851 1124 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 HMGA1P17096 107 aaKnown RBP23.07■■□□□ 1.28
SNX1-210ENST00000560260 KCNQ1P51787 676 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 PKDCCQ504Y2 493 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 SMYD5Q6GMV2 418 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 LCLAT1Q6UWP7 414 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 UNC80Q8N2C7 3258 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 PSMG2Q969U7 264 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 DUSP16Q9BY84 665 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 POMKQ9H5K3 350 aa23.07■■□□□ 1.28
SNX1-210ENST00000560260 ITIH6Q6UXX5 1313 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 SLC38A8A6NNN8 435 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 NPR3P17342 541 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 SOX5P35711 763 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 CCR2P41597 374 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 USP46P62068 366 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 CNGA2Q16280 664 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 SLC5A9Q2M3M2 681 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 FIGNQ5HY92 759 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 E4F1Q66K89 784 aaPredicted RBP23.06■■□□□ 1.28
SNX1-210ENST00000560260 CES5AQ6NT32 575 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 CYP26C1Q6V0L0 522 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 GPRIN1Q7Z2K8 1008 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 DNAJB7Q7Z6W7 309 aaPredicted RBP23.06■■□□□ 1.28
SNX1-210ENST00000560260 ZNF606Q8WXB4 792 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 SPATA17Q96L03 361 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 SPAG5Q96R06 1193 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 CORO1BQ9BR76 489 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 PIDD1Q9HB75 910 aa23.06■■□□□ 1.28
SNX1-210ENST00000560260 MYH10P35580 1976 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 CLUHO75153 1309 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms