RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 DMC1Q14565 340 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 ZNF77Q15935 545 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 CCDC6Q16204 474 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 DUOXA2Q1HG44 320 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 SOWAHAQ2M3V2 549 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 PLK5Q496M5 336 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 USP39Q53GS9 565 aaKnown RBP9.82□□□□□ -0.84
HDDC3-204ENST00000559834 N4BP2L1Q5TBK1 243 aaPredicted RBP9.82□□□□□ -0.84
HDDC3-204ENST00000559834 CCDC65Q8IXS2 484 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 GPD1LQ8N335 351 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 KIAA1958Q8N8K9 716 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 CXorf38Q8TB03 319 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 SH3RF2Q8TEC5 729 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 HPDLQ96IR7 371 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 SPATA17Q96L03 361 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 HHIPQ96QV1 700 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 PKMYT1Q99640 499 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 CBWD1Q9BRT8 395 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 PANK2Q9BZ23 570 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 PCIF1Q9H4Z3 704 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 KIAA1586Q9HCI6 787 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 INTS13Q9NVM9 706 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 TRPM5Q9NZQ8 1165 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 FBXO2Q9UK22 296 aaPredicted RBP9.82□□□□□ -0.84
HDDC3-204ENST00000559834 ANGPTL2Q9UKU9 493 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 ARHGAP26Q9UNA1 814 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 WNT6Q9Y6F9 365 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 SLC9A3R1O14745 358 aaPredicted RBP9.81□□□□□ -0.84
HDDC3-204ENST00000559834 TADA3O75528 432 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 PRPF6O94906 941 aaKnown RBP9.81□□□□□ -0.84
HDDC3-204ENST00000559834 CAVIN2O95810 425 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 FAM163BP0C2L3 166 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 GBP1P32455 592 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 DGKEP52429 567 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 WNT7BP56706 349 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 CREB5Q02930 508 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 CEBPZQ03701 1054 aaKnown RBP9.81□□□□□ -0.84
HDDC3-204ENST00000559834 EML3Q32P44 896 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 RNF43Q68DV7 783 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 OSTM1Q86WC4 334 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 STKLD1Q8NE28 680 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 TSTD1Q8NFU3 115 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 RIN3Q8TB24 985 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 CLIC6Q96NY7 704 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 SLC22A12Q96S37 553 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 MMS19Q96T76 1030 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 SYT15Q9BQS2 421 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 LSM14BQ9BX40 385 aaKnown RBP9.81□□□□□ -0.84
HDDC3-204ENST00000559834 MTMR12Q9C0I1 747 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 DUSP15Q9H1R2 295 aaPredicted RBP9.81□□□□□ -0.84
HDDC3-204ENST00000559834 LINC00597Q9H2U6 94 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 GCNT4Q9P109 453 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 SIX4Q9UIU6 781 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 DMDP11532 3685 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 ATG2BQ96BY7 2078 aa9.81□□□□□ -0.84
HDDC3-204ENST00000559834 ZNF638Q14966 1978 aaKnown RBP9.81□□□□□ -0.84
HDDC3-204ENST00000559834 TCHHQ07283 1943 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 FRMD3A2A2Y4 597 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 BCLAF3A2AJT9 711 aaKnown RBP9.8□□□□□ -0.84
HDDC3-204ENST00000559834 C2orf78A6NCI8 922 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 TRIM66O15016 1216 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 PDGFRBP09619 1106 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 BDNFP23560 247 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 LMO2P25791 158 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 PMLP29590 882 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 GNL1P36915 607 aaPredicted RBP9.8□□□□□ -0.84
HDDC3-204ENST00000559834 CASP5P51878 434 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 SHC2P98077 582 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 AMPD3Q01432 767 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 CYP27A1Q02318 531 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 USP4Q13107 963 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 CUL4AQ13619 759 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 SLC39A14Q15043 492 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 DAB2IPQ5VWQ8 1189 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 DENND5BQ6ZUT9 1274 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 HS2ST1Q7LGA3 356 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 LIMS2Q7Z4I7 341 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 ADGRG2Q8IZP9 1017 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 ZSWIM2Q8NEG5 633 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 SNX25Q9H3E2 840 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 RXFP3Q9NSD7 469 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 POLR3BQ9NW08 1133 aaPredicted RBP9.8□□□□□ -0.84
HDDC3-204ENST00000559834 GTF3C3Q9Y5Q9 886 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 MORC2Q9Y6X9 1032 aaPredicted RBP9.8□□□□□ -0.84
HDDC3-204ENST00000559834 DMXL1Q9Y485 3027 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 ANK1P16157 1881 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 ACACBO00763 2458 aa9.8□□□□□ -0.84
HDDC3-204ENST00000559834 SPAG17Q6Q759 2223 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 CNOT1A5YKK6 2376 aaKnown RBP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 ZNF840PA6NDX5 716 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 LEFTY2O00292 366 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 KHNYNO15037 678 aaKnown RBP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 ATP2C2O75185 946 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 ALDH1A2O94788 518 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 KCNK5O95279 499 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 ABL1P00519 1130 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 TNNI1P19237 187 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 WARSP23381 471 aaKnown RBP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 NOP14P78316 857 aaKnown RBP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 SLC7A9P82251 487 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms