RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CYP4X1Q8N118 509 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 KCTD6Q8NC69 237 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 EMID1Q96A84 441 aaPredicted RBP11.17□□□□□ -0.62
CUX1-217ENST00000558836 RBM15Q96T37 977 aaKnown RBP eCLIP11.17□□□□□ -0.621e-11■■■■□ 20.4
CUX1-217ENST00000558836 LHX5Q9H2C1 402 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 RNF39Q9H2S5 420 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 MORF4L1Q9UBU8 362 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 STRIP2Q9ULQ0 834 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 C3orf70A6NLC5 250 aaPredicted RBP11.17□□□□□ -0.62
CUX1-217ENST00000558836 PAEPP09466 180 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 CYP2C9P11712 490 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 IBSPP21815 317 aaPredicted RBP11.17□□□□□ -0.62
CUX1-217ENST00000558836 OTUD4Q01804 1114 aaKnown RBP11.17□□□□□ -0.62
CUX1-217ENST00000558836 C6orf118Q5T5N4 469 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 PMF1Q6P1K2 205 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 SCYL2Q6P3W7 929 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 NPNTQ6UXI9 565 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 ANKRD23Q86SG2 305 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 EXOC3L1Q86VI1 746 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 KAT2BQ92831 832 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 PGM2Q96G03 612 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 CFAP57Q96MR6 1250 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 PEBP4Q96S96 227 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 PRMT1Q99873 361 aaKnown RBP11.17□□□□□ -0.62
CUX1-217ENST00000558836 TRIM6Q9C030 488 aaPredicted RBP11.17□□□□□ -0.62
CUX1-217ENST00000558836 MIS12Q9H081 205 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 ADAMTS10Q9H324 1103 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 DPEP3Q9H4B8 488 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 HOMER3Q9NSC5 361 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 CACNG4Q9UBN1 327 aa11.17□□□□□ -0.62
CUX1-217ENST00000558836 BARX2Q9UMQ3 279 aaPredicted RBP11.17□□□□□ -0.62
CUX1-217ENST00000558836 TREHO43280 583 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 TRAPPC3O43617 180 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 PECAM1P16284 738 aaPredicted RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 IGFBP6P24592 240 aaPredicted RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 POU5F1BQ06416 359 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 CCDC142Q17RM4 750 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 SPDYCQ5MJ68 293 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 ZNF618Q5T7W0 954 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 FAM183BPQ6ZVS7 135 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 TRMT10CQ7L0Y3 403 aaKnown RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 IFNLR1Q8IU57 520 aaPredicted RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 CCDC33Q8N5R6 958 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 C2orf69Q8N8R5 385 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 PARK7Q99497 189 aaKnown RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 NT5C1AQ9BXI3 368 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 SAYSD1Q9NPB0 183 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 GPATCH2LQ9NWQ4 482 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 GPR32O75388 356 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 FAM107AO95990 144 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 PFKMP08237 780 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 KDELR1P24390 212 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 YARSP54577 528 aaKnown RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 IFT88Q13099 833 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 CNGA2Q16280 664 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 GOLGA7BQ2TAP0 167 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 PPP1R2P3Q6NXS1 205 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 ZC3H18Q86VM9 953 aaKnown RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 TAX1BP1Q86VP1 789 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 ALLCQ8N6M5 410 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 OR6B3Q8NGW1 331 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 RXFP2Q8WXD0 754 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 MAGEB5Q9BZ81 275 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 USP18Q9UMW8 372 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 PIN4Q9Y237 131 aaKnown RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 LOC102724159A0A0B4J2E5 919 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 P4HA1P13674 534 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 PDGFRAP16234 1089 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 LIG3P49916 1009 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 MYO1EQ12965 1108 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 PWP2Q15269 919 aaKnown RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 FAM110CQ1W6H9 321 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 CST9Q5W186 159 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 HIBCHQ6NVY1 386 aaPredicted RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 RFX6Q8HWS3 928 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 ANKMY2Q8IV38 441 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 ANKRD42Q8N9B4 389 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 CLEC4CQ8WTT0 213 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 GTF3C2Q8WUA4 911 aaPredicted RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 ARHGEF2Q92974 986 aaKnown RBP11.16□□□□□ -0.62
CUX1-217ENST00000558836 KCNK9Q9NPC2 374 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 ITGA11Q9UKX5 1188 aa11.16□□□□□ -0.62
CUX1-217ENST00000558836 A6NNZ2 444 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 IGF2BP3O00425 579 aaKnown RBP eCLIP11.15□□□□□ -0.62
CUX1-217ENST00000558836 RNF8O76064 485 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 RECQL4O94761 1208 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 MYL3P08590 195 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 VDRP11473 427 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 TFE3P19532 575 aaPredicted RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 LMO2P25791 158 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 ATICP31939 592 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 MAGEA4P43358 317 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 MMP13P45452 471 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 VCPP55072 806 aaKnown RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 TAP1Q03518 808 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 OASLQ15646 514 aaKnown RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 TUBB8Q3ZCM7 444 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 LRRC38Q5VT99 294 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 IQSEC1Q6DN90 963 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 SYDE1Q6ZW31 735 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms