RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ABRAQ8N0Z2 381 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 AGBL3Q8NEM8 1001 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 RSAD2Q8WXG1 361 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 GMLQ99445 158 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 BTBD10Q9BSF8 475 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 CYP4F11Q9HBI6 524 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 XPNPEP1Q9NQW7 623 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 RBAKQ9NYW8 714 aaPredicted RBP12.93□□□□□ -0.34
LDLR-205ENST00000557933 SBF1O95248 1867 aa12.93□□□□□ -0.34
LDLR-205ENST00000557933 YDJCA8MPS7 323 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 CSDE1O75534 798 aaKnown RBP12.92□□□□□ -0.34
LDLR-205ENST00000557933 TCEA3O75764 348 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 ZMPSTE24O75844 475 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 TJP3O95049 919 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 ACO1P21399 889 aaKnown RBP12.92□□□□□ -0.34
LDLR-205ENST00000557933 MAN1A1P33908 653 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 ATXN3P54252 364 aaPredicted RBP12.92□□□□□ -0.34
LDLR-205ENST00000557933 CACNA2D1P54289 1103 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 CCDC60Q8IWA6 550 aaPredicted RBP12.92□□□□□ -0.34
LDLR-205ENST00000557933 EXD1Q8NHP7 514 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 EBF4Q9BQW3 602 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 MTMR12Q9C0I1 747 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 DCLRE1BQ9H816 532 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 KCNK13Q9HB14 408 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 IL1RAPL1Q9NZN1 696 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 COQ4Q9Y3A0 265 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 DCAF8L1A6NGE4 600 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 CYP1A1P04798 512 aaPredicted RBP12.92□□□□□ -0.34
LDLR-205ENST00000557933 MAPTP10636 758 aaKnown RBP12.92□□□□□ -0.34
LDLR-205ENST00000557933 SLC1A1P43005 524 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 EPHB1P54762 984 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 VCPP55072 806 aaKnown RBP12.92□□□□□ -0.34
LDLR-205ENST00000557933 CDH8P55286 799 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 ARHGEF16Q5VV41 709 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 PRAMEF18Q5VWM3 479 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 C1orf228Q6PIY5 440 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 IZUMO2Q6UXV1 221 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 UNC5BQ8IZJ1 945 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 ZNF276Q8N554 614 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 AGR3Q8TD06 166 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 PYDC1Q8WXC3 89 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 CLEC4DQ8WXI8 215 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 TFAP2BQ92481 460 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 RILPQ96NA2 401 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 EHMT1Q9H9B1 1298 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 KRT82Q9NSB4 513 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 AGO2Q9UKV8 859 aaKnown RBP12.92□□□□□ -0.34
LDLR-205ENST00000557933 EXOC7Q9UPT5 735 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 hCG_1818297A0A087WSY0 165 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 CXorf49A8MYA2 514 aaPredicted RBP12.92□□□□□ -0.34
LDLR-205ENST00000557933 C2CD2LO14523 706 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 ATP2A1O14983 1001 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 PRPF4O43172 522 aaKnown RBP eCLIP12.92□□□□□ -0.346e-9■■□□□ 13.2
LDLR-205ENST00000557933 PDE5AO76074 875 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 PSMG1O95456 288 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 MUTP22033 750 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 CAP2P40123 477 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 VHLP40337 213 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 CCDC15Q0P6D6 951 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 TCEAL1Q15170 157 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 RASA2Q15283 850 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 MAIP1Q8WWC4 291 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 INPP5DQ92835 1189 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 MFSD14AQ96MC6 490 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 C20orf27Q9GZN8 174 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 GPATCH2LQ9NWQ4 482 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 STOML1Q9UBI4 398 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 ZNRF3Q9ULT6 936 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 SMG5Q9UPR3 1016 aaKnown RBP12.92□□□□□ -0.34
LDLR-205ENST00000557933 IKBKGQ9Y6K9 419 aa12.92□□□□□ -0.34
LDLR-205ENST00000557933 ALOX15BO15296 676 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 PSTPIP1O43586 416 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 CCDC22O60826 627 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 PSMA2P25787 234 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 MYL6P60660 151 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 GCNT1Q02742 428 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 BAATQ14032 418 aaPredicted RBP12.91□□□□□ -0.34
LDLR-205ENST00000557933 PGM5Q15124 567 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 SLC45A4Q5BKX6 768 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 CFAP157Q5JU67 520 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 CCDC62Q6P9F0 684 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 SYDE1Q6ZW31 735 aaPredicted RBP12.91□□□□□ -0.34
LDLR-205ENST00000557933 POLNQ7Z5Q5 900 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 RFX6Q8HWS3 928 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 RBM15BQ8NDT2 890 aaKnown RBP12.91□□□□□ -0.34
LDLR-205ENST00000557933 PPP1R36Q96LQ0 422 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 ASCC2Q9H1I8 757 aaPredicted RBP12.91□□□□□ -0.34
LDLR-205ENST00000557933 OCEL1Q9H607 264 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 PPM1HQ9ULR3 514 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 G3BP2Q9UN86 482 aaKnown RBP12.91□□□□□ -0.34
LDLR-205ENST00000557933 MAGED2Q9UNF1 606 aaPredicted RBP12.91□□□□□ -0.34
LDLR-205ENST00000557933 TCRBV9S1A1TA0A576 114 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 LYPLA1O75608 230 aaPredicted RBP12.91□□□□□ -0.34
LDLR-205ENST00000557933 RPS12P25398 132 aaKnown RBP12.91□□□□□ -0.34
LDLR-205ENST00000557933 TMPRSS15P98073 1019 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 PTP4A2Q12974 167 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 OASLQ15646 514 aaKnown RBP12.91□□□□□ -0.34
LDLR-205ENST00000557933 RSBN1LQ6PCB5 846 aaPredicted RBP12.91□□□□□ -0.34
LDLR-205ENST00000557933 EEPD1Q7L9B9 569 aa12.91□□□□□ -0.34
LDLR-205ENST00000557933 OGFOD1Q8N543 542 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms