RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 HNRNPLP14866 589 aaKnown RBP eCLIP10.05□□□□□ -0.8
SYNE2-224ENST00000557024 HMGA1P17096 107 aaKnown RBP10.05□□□□□ -0.8
SYNE2-224ENST00000557024 ITPKAP23677 461 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 DDX6P26196 483 aaKnown RBP eCLIP10.05□□□□□ -0.8
SYNE2-224ENST00000557024 P2RY2P41231 377 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 MATR3P43243 847 aaKnown RBP eCLIP10.05□□□□□ -0.8
SYNE2-224ENST00000557024 IFNAR2P48551 515 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 LILRA4P59901 499 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 NUCB2P80303 420 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 GUCY1B3Q02153 619 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 PPP2R3AQ06190 1150 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 STRN3Q13033 797 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 CRY1Q16526 586 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 QPCTQ16769 361 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 LYSMD4Q5XG99 296 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 HAUS3Q68CZ6 603 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 SLC23A3Q6PIS1 610 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 MON1AQ86VX9 555 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 OR2I1PQ8NGU4 316 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 OLIG1Q8TAK6 271 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 OSCP1Q8WVF1 389 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 MRPS31Q92665 395 aaKnown RBP10.05□□□□□ -0.8
SYNE2-224ENST00000557024 ATP2A3Q93084 1043 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 SPACA7Q96KW9 195 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 CAMK1GQ96NX5 476 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 SLC4A5Q9BY07 1137 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 ZCWPW1Q9H0M4 648 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 CCDC86Q9H6F5 360 aaKnown RBP10.05□□□□□ -0.8
SYNE2-224ENST00000557024 TRPC7Q9HCX4 862 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 DDX19AQ9NUU7 478 aaKnown RBP10.05□□□□□ -0.8
SYNE2-224ENST00000557024 ABI2Q9NYB9 513 aaPredicted RBP10.05□□□□□ -0.8
SYNE2-224ENST00000557024 MMP17Q9ULZ9 603 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 MAGED2Q9UNF1 606 aaPredicted RBP10.05□□□□□ -0.8
SYNE2-224ENST00000557024 KIAA1024Q9UPX6 916 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 BPTFQ12830 3046 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 KIF26AQ9ULI4 1882 aaPredicted RBP10.04□□□□□ -0.8
SYNE2-224ENST00000557024 SFI1A8K8P3 1242 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 LACTBL1A8MY62 500 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 K7EQS6 105 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 CLDN3O15551 220 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 OPHN1O60890 802 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 ALDH1A2O94788 518 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 OR52Z1P0C646 297 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 HAPLN1P10915 354 aaPredicted RBP10.04□□□□□ -0.8
SYNE2-224ENST00000557024 CYP3A5P20815 502 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 SYT1P21579 422 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 TNFSF9P41273 254 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 GCGRP47871 477 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 GPR15P49685 360 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 GUCA2AQ02747 115 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 GFPT1Q06210 699 aaPredicted RBP10.04□□□□□ -0.8
SYNE2-224ENST00000557024 MCL1Q07820 350 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 MAPK7Q13164 816 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 ZNF268Q14587 947 aaPredicted RBP10.04□□□□□ -0.8
SYNE2-224ENST00000557024 ZNF77Q15935 545 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 EML3Q32P44 896 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 SDHAF4Q5VUM1 108 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 LRRTM3Q86VH5 581 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 SFTPA1Q8IWL2 248 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 EFCAB13Q8IY85 973 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 PNPLA1Q8N8W4 532 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 CCDC26Q8TAB7 109 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 MDM1Q8TC05 714 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 ADAM32Q8TC27 787 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 POM121Q96HA1 1249 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 DRC1Q96MC2 740 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 SLC22A12Q96S37 553 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 RUSC1Q9BVN2 902 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 HAPLN2Q9GZV7 340 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 PLEKHA5Q9HAU0 1116 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 CHMP5Q9NZZ3 219 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 BCCIPQ9P287 314 aaKnown RBP eCLIP10.04□□□□□ -0.8
SYNE2-224ENST00000557024 PILRBQ9UKJ0 227 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 SLC6A14Q9UN76 642 aa10.04□□□□□ -0.8
SYNE2-224ENST00000557024 ADAMTS20P59510 1910 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 MAST4O15021 2626 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 XPOTO43592 962 aaKnown RBP10.03□□□□□ -0.8
SYNE2-224ENST00000557024 TADA3O75528 432 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 CYP11A1P05108 521 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 CKMP06732 381 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 CD59P13987 128 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 MUTP22033 750 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 OPRD1P41143 372 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 FAM160A1Q05DH4 1040 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 USP4Q13107 963 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 NR1H3Q13133 447 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 TRIP6Q15654 476 aaKnown RBP10.03□□□□□ -0.8
SYNE2-224ENST00000557024 ZNF174Q15697 407 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 ENOX2Q16206 610 aaKnown RBP10.03□□□□□ -0.8
SYNE2-224ENST00000557024 DUOXA1Q1HG43 343 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 FOXD4L5Q5VV16 416 aaPredicted RBP10.03□□□□□ -0.8
SYNE2-224ENST00000557024 LMBRD2Q68DH5 695 aaPredicted RBP10.03□□□□□ -0.8
SYNE2-224ENST00000557024 CCNI2Q6ZMN8 369 aaPredicted RBP10.03□□□□□ -0.8
SYNE2-224ENST00000557024 MINDY1Q8N5J2 469 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 DEFB119Q8N690 84 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 ALLCQ8N6M5 410 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 TXNDC5Q8NBS9 432 aaKnown RBP10.03□□□□□ -0.8
SYNE2-224ENST00000557024 FBXO18Q8NFZ0 1043 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 SPPL2BQ8TCT7 592 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 WHAMMQ8TF30 809 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms