RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 SOX9P48436 509 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 PCYT1AP49585 367 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 TSPAN5P62079 268 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 HPCAP84074 193 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 PURAQ00577 322 aaKnown RBP6.5□□□□□ -1.37
TDP1-215ENST00000556498 RING1Q06587 406 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 ADAM9Q13443 819 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 SNW1Q13573 536 aaKnown RBP6.5□□□□□ -1.37
TDP1-215ENST00000556498 COL9A2Q14055 689 aaPredicted RBP6.5□□□□□ -1.37
TDP1-215ENST00000556498 PTK2BQ14289 1009 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 ACAP2Q15057 778 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 XKR3Q5GH77 459 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 MAP3K21Q5TCX8 1036 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 SNRNP48Q6IEG0 339 aaKnown RBP6.5□□□□□ -1.37
TDP1-215ENST00000556498 CCDC149Q6ZUS6 474 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 RFPL4BQ6ZWI9 263 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 USP50Q70EL3 339 aaPredicted RBP6.5□□□□□ -1.37
TDP1-215ENST00000556498 CYFIP1Q7L576 1253 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 AGGF1Q8N302 714 aaeCLIP6.5□□□□□ -1.37
TDP1-215ENST00000556498 NAT8LQ8N9F0 302 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 CNBD1Q8NA66 436 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 RNF169Q8NCN4 708 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 NAXEQ8NCW5 288 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 LINS1Q8NG48 757 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 TTLQ8NG68 377 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 TTLL11Q8NHH1 800 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 PIP4K2CQ8TBX8 421 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 STON2Q8WXE9 905 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 C19orf60Q96EN9 201 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 PLPPR2Q96GM1 343 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 MSANTD3Q96H12 275 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 VPS39Q96JC1 886 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 EXOC2Q96KP1 924 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 C7orf34Q96L11 122 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 IFT74Q96LB3 600 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 NOX5Q96PH1 765 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 MPHOSPH8Q99549 860 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 TIPINQ9BVW5 301 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 SNX25Q9H3E2 840 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 NTN4Q9HB63 628 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 MRM3Q9HC36 420 aaKnown RBP6.5□□□□□ -1.37
TDP1-215ENST00000556498 SEMA3GQ9NS98 782 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 BLOC1S4Q9NUP1 217 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 CRIM1Q9NZV1 1036 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 HACD3Q9P035 362 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 SENP1Q9P0U3 644 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 STK17AQ9UEE5 414 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 CD300AQ9UGN4 299 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 ZNF112Q9UJU3 913 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 RAB21Q9UL25 225 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 L3MBTL1Q9Y468 752 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 SPEF1Q9Y4P9 236 aa6.5□□□□□ -1.37
TDP1-215ENST00000556498 SNAPC4Q5SXM2 1469 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 DCDC2CA8MYV0 355 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 F8W031 263 aaPredicted RBP6.49□□□□□ -1.37
TDP1-215ENST00000556498 SLC22A1O15245 554 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 TMPRSS2O15393 492 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 PDPK1O15530 556 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 ECE2O60344 883 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 TSPAN3O60637 253 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 TIPRLO75663 272 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 ALDH1A2O94788 518 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 TRIM16O95361 564 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 TIAF1O95411 115 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 ASMTLO95671 621 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 GAS8O95995 478 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 PLGP00747 810 aaPredicted RBP6.49□□□□□ -1.37
TDP1-215ENST00000556498 HEXBP07686 556 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 PDHBP11177 359 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 DRD2P14416 443 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 GAP43P17677 238 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 PSMA2P25787 234 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 LRPAP1P30533 357 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 CIITAP33076 1130 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 RFC4P35249 363 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 NUDT1P36639 197 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 MAPK9P45984 424 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 ERVK-24P63145 666 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 ID3Q02535 119 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 RELAQ04206 551 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 CHRNEQ04844 493 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 RNASELQ05823 741 aaKnown RBP6.49□□□□□ -1.37
TDP1-215ENST00000556498 SOX4Q06945 474 aaPredicted RBP6.49□□□□□ -1.37
TDP1-215ENST00000556498 ENPEPQ07075 957 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 CACNB2Q08289 660 aaPredicted RBP6.49□□□□□ -1.37
TDP1-215ENST00000556498 DCTN2Q13561 401 aaKnown RBP6.49□□□□□ -1.37
TDP1-215ENST00000556498 CUL2Q13617 745 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 PTPAQ15257 358 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 GPR162Q16538 588 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 WIPI1Q5MNZ9 446 aaPredicted RBP6.49□□□□□ -1.37
TDP1-215ENST00000556498 GRTP1Q5TC63 336 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 FYB2Q5VWT5 728 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 METTL21CQ5VZV1 264 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 ANKRD34AQ69YU3 496 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 LIN54Q6MZP7 749 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 PGM2L1Q6PCE3 622 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 SHQ1Q6PI26 577 aaKnown RBP6.49□□□□□ -1.37
TDP1-215ENST00000556498 TRIM65Q6PJ69 517 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 C4orf22Q6V702 233 aa6.49□□□□□ -1.37
TDP1-215ENST00000556498 KIF6Q6ZMV9 814 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms