RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CNGA2Q16280 664 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 GEN1Q17RS7 908 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 JADE1Q6IE81 842 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 RWDD4Q6NW29 188 aaKnown RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 XRRA1Q6P2D8 792 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 METTL7BQ6UX53 244 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 CYP4X1Q8N118 509 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 SIX6OS1Q8N1H7 587 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 PGM2Q96G03 612 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 OSBPL1AQ9BXW6 950 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 PCMTD2Q9NV79 361 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 PHTF1Q9UMS5 762 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 USP18Q9UMW8 372 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 MYH1P12882 1939 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 ZNF541Q9H0D2 1346 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 CSPG5O95196 566 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 SLC4A1P02730 911 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 PTGIRP43119 386 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 NDST1P52848 882 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 RBBP5Q15291 538 aaKnown RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 MPZL3Q6UWV2 235 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 ZDHHC14Q8IZN3 488 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 SCYL1Q96KG9 808 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 MTFR1LQ9H019 292 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 KLC2Q9H0B6 622 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 CCDC88AQ3V6T2 1871 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 ATRNL1Q5VV63 1379 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 A0A1W2PPM1 405 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 RPS12P25398 132 aaKnown RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 PTPN11Q06124 597 aaPredicted RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 SDCCAG8Q86SQ7 713 aaPredicted RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 TFAP2BQ92481 460 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 OSMRQ99650 979 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 TRIM55Q9BYV6 548 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 ROPN1BQ9BZX4 212 aaPredicted RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 ROPN1Q9HAT0 212 aaPredicted RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 ERAP1Q9NZ08 941 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 BTBD7Q9P203 1132 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 TIMM13Q9Y5L4 95 aaPredicted RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 NR2E3Q9Y5X4 410 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 IQANK1A0A1B0GTG1 560 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 PSTPIP1O43586 416 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 MIPP30301 263 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 DCAF6Q58WW2 860 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 KIAA0319LQ8IZA0 1049 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 TTC13Q8NBP0 860 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 CCDC124Q96CT7 223 aaKnown RBP15.52■□□□□ 0.08
CUX1-215ENST00000556210 APOL2Q9BQE5 337 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 NT5C1AQ9BXI3 368 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 DDX56Q9NY93 547 aaKnown RBP15.52■□□□□ 0.08
CUX1-215ENST00000556210 AFG3L2Q9Y4W6 797 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 FSCN2O14926 492 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 GYG2O15488 501 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 CA8P35219 290 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 POLE2P56282 527 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 CENPCQ03188 943 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 BIRC2Q13490 618 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 SPRED3Q2MJR0 410 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 GMLQ99445 158 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 TSC22D3Q99576 134 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 CYP4F11Q9HBI6 524 aa15.52■□□□□ 0.08
CUX1-215ENST00000556210 KLHL8Q9P2G9 620 aaPredicted RBP15.52■□□□□ 0.08
CUX1-215ENST00000556210 SPATA31C2B4DYI2 1134 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 E5RJQ4 531 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 ACAT1P24752 427 aaKnown RBP15.52■□□□□ 0.07
CUX1-215ENST00000556210 ARPP19P56211 112 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 CRADDP78560 199 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 HEATR6Q6AI08 1181 aaKnown RBP15.52■□□□□ 0.07
CUX1-215ENST00000556210 C6orf89Q6UWU4 347 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 PID1Q7Z2X4 250 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 ADAM32Q8TC27 787 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 ART4Q93070 314 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 ATP2A3Q93084 1043 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 KLRG1Q96E93 195 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 TTC25Q96NG3 672 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 HERPUD2Q9BSE4 406 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 PSMC3IPQ9P2W1 217 aaPredicted RBP15.52■□□□□ 0.07
CUX1-215ENST00000556210 TRIM49D1C9J1S8 452 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 NFKBIEO00221 500 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 SNX3O60493 162 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 KRT37O76014 449 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 CBX6O95503 412 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 ADRA1DP25100 572 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 ECHS1P30084 290 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 RPA3P35244 121 aaPredicted RBP15.52■□□□□ 0.07
CUX1-215ENST00000556210 ADCYAP1R1P41586 468 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 ARFIP2P53365 341 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 SCARA3Q6AZY7 606 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 CES3Q6UWW8 571 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 BRSK2Q8IWQ3 736 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 USP33Q8TEY7 942 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 ZDHHC18Q9NUE0 388 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 TSPAN16Q9UKR8 245 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 SMCHD1A6NHR9 2005 aa15.52■□□□□ 0.07
CUX1-215ENST00000556210 C4BPAP04003 597 aaKnown RBP15.51■□□□□ 0.07
CUX1-215ENST00000556210 ABCD1P33897 745 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 ELK3P41970 407 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 EML3Q32P44 896 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 NLGN2Q8NFZ4 835 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms