RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 MRPS17Q9Y2R5 130 aaKnown RBP5.13□□□□□ -1.59
SCFD1-217ENST00000555953 H7C1Q1 480 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 BCAR3O75815 825 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 CSF1RP07333 972 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 NR4A2P43354 598 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 KCNJ5P48544 419 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 GPSM2P81274 684 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 FHL1Q13642 323 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 RABEP1Q15276 862 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 KHDC1LQ5JSQ8 128 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 ABHD11Q8NFV4 315 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 SOCS4Q8WXH5 440 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 HSPBAP1Q96EW2 488 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 LENG8Q96PV6 779 aaPredicted RBP5.12□□□□□ -1.59
SCFD1-217ENST00000555953 WACQ9BTA9 647 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 XPR1Q9UBH6 696 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 SHOC2Q9UQ13 582 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 WDR17Q8IZU2 1322 aa5.12□□□□□ -1.59
SCFD1-217ENST00000555953 EXOC3O60645 756 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 MYO1EQ12965 1108 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 GTF2H3Q13889 308 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 Q4G0T1 1027 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 DEPDC1Q5TB30 811 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 MIS18BP1Q6P0N0 1132 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 ZNF280BQ86YH2 543 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 TERB1Q8NA31 727 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 ZC3H10Q96K80 434 aaKnown RBP5.11□□□□□ -1.59
SCFD1-217ENST00000555953 MOGAT1Q96PD6 335 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 PUS7Q96PZ0 661 aaKnown RBP5.11□□□□□ -1.59
SCFD1-217ENST00000555953 CXorf36Q9H7Y0 433 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 SARS2Q9NP81 518 aaKnown RBP5.11□□□□□ -1.59
SCFD1-217ENST00000555953 KLHL13Q9P2N7 655 aa5.11□□□□□ -1.59
SCFD1-217ENST00000555953 LUC7L2Q9Y383 392 aaKnown RBP5.11□□□□□ -1.59
SCFD1-217ENST00000555953 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.11□□□□□ -1.59
SCFD1-217ENST00000555953 E5RJQ4 531 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 POC1B-GALNT4F8VUJ3 575 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 ALDH2P05091 517 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 FPR3P25089 353 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 ADORA2AP29274 412 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 PDE6CP51160 858 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 FOXG1P55316 489 aaPredicted RBP5.1□□□□□ -1.59
SCFD1-217ENST00000555953 UCP3P55916 312 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 TBC1D25Q3MII6 688 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 ZIK1Q3SY52 487 aaPredicted RBP5.1□□□□□ -1.59
SCFD1-217ENST00000555953 L1TD1Q5T7N2 865 aaKnown RBP5.1□□□□□ -1.59
SCFD1-217ENST00000555953 KRT73Q86Y46 540 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 SLC15A3Q8IY34 581 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 GALNT4Q8N4A0 578 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 PLBD2Q8NHP8 589 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 HMCESQ96FZ2 354 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 CDK5RAP3Q96JB5 506 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 SNX18Q96RF0 628 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 ARMT1Q9H993 441 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 CPA4Q9UI42 421 aa5.1□□□□□ -1.59
SCFD1-217ENST00000555953 VNN1O95497 513 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 CYP2A6P11509 494 aaPredicted RBP5.09□□□□□ -1.59
SCFD1-217ENST00000555953 HOXB6P17509 224 aaKnown RBP5.09□□□□□ -1.59
SCFD1-217ENST00000555953 AKAP5P24588 427 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 LRPAP1P30533 357 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 SLC11A2P49281 568 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 RENBPP51606 427 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 LAMB3Q13751 1172 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 TRIP6Q15654 476 aaKnown RBP5.09□□□□□ -1.59
SCFD1-217ENST00000555953 CYP1B1Q16678 543 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 LY6KQ17RY6 165 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 ZNF260Q3ZCT1 412 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 PXDC1Q5TGL8 231 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 OSCP1Q8WVF1 389 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 MRGPRX1Q96LB2 322 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 TMEM79Q9BSE2 394 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 CIPCQ9C0C6 399 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 SCAF8Q9UPN6 1271 aaKnown RBP5.09□□□□□ -1.59
SCFD1-217ENST00000555953 STXBP5LQ9Y2K9 1186 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 MED16Q9Y2X0 877 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 TMX2Q9Y320 296 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 AFG3L2Q9Y4W6 797 aa5.09□□□□□ -1.59
SCFD1-217ENST00000555953 USP1O94782 785 aa5.08□□□□□ -1.6
SCFD1-217ENST00000555953 CHRM5P08912 532 aaPredicted RBP5.08□□□□□ -1.6
SCFD1-217ENST00000555953 DLDP09622 509 aaKnown RBP5.08□□□□□ -1.6
SCFD1-217ENST00000555953 ALDH5A1P51649 535 aaPredicted RBP5.08□□□□□ -1.6
SCFD1-217ENST00000555953 E2F1Q01094 437 aa5.08□□□□□ -1.6
SCFD1-217ENST00000555953 CERKLQ49MI3 558 aaPredicted RBP5.08□□□□□ -1.6
SCFD1-217ENST00000555953 RNASE12Q5GAN4 147 aaKnown RBP5.08□□□□□ -1.6
SCFD1-217ENST00000555953 DPY19L3Q6ZPD9 716 aa5.08□□□□□ -1.6
SCFD1-217ENST00000555953 PRSS3P2Q8NHM4 247 aa5.08□□□□□ -1.6
SCFD1-217ENST00000555953 HPS3Q969F9 1004 aa5.08□□□□□ -1.6
SCFD1-217ENST00000555953 MTFMTQ96DP5 389 aaKnown RBP5.08□□□□□ -1.6
SCFD1-217ENST00000555953 CGRRF1Q99675 332 aa5.08□□□□□ -1.6
SCFD1-217ENST00000555953 MESP1Q9BRJ9 268 aa5.08□□□□□ -1.6
SCFD1-217ENST00000555953 TRNAU1APQ9NX07 287 aaKnown RBP5.08□□□□□ -1.6
SCFD1-217ENST00000555953 SNX14Q9Y5W7 946 aa5.08□□□□□ -1.6
SCFD1-217ENST00000555953 TCRBV5S1A1TA0A578 114 aa5.07□□□□□ -1.6
SCFD1-217ENST00000555953 ATP5F1P24539 256 aaPredicted RBP5.07□□□□□ -1.6
SCFD1-217ENST00000555953 LRRC41Q15345 812 aa5.07□□□□□ -1.6
SCFD1-217ENST00000555953 MTHFD1LQ6UB35 978 aa5.07□□□□□ -1.6
SCFD1-217ENST00000555953 SERPINA13PQ6UXR4 307 aa5.07□□□□□ -1.6
SCFD1-217ENST00000555953 ZNF517Q6ZMY9 492 aaPredicted RBP5.07□□□□□ -1.6
SCFD1-217ENST00000555953 ZBTB46Q86UZ6 589 aa5.07□□□□□ -1.6
SCFD1-217ENST00000555953 CAND1Q86VP6 1230 aaKnown RBP5.07□□□□□ -1.6
SCFD1-217ENST00000555953 GRAMD1CQ8IYS0 662 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms