RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 ZNF653Q96CK0 615 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 SEPT5Q99719 369 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-220ENST00000555634 LRRC4Q9HBW1 653 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 MRPL47Q9HD33 250 aaKnown RBP11.84□□□□□ -0.51
SHMT2-220ENST00000555634 PNPLA8Q9NP80 782 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 CYLDQ9NQC7 956 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 WDR35Q9P2L0 1181 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 HSFX1Q9UBD0 423 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 LCMT1Q9UIC8 334 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 INTUQ9ULD6 942 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 ZKSCAN5Q9Y2L8 839 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 GREB1Q4ZG55 1949 aa11.84□□□□□ -0.51
SHMT2-220ENST00000555634 TMEM265A0A087WTH1 108 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 H3BNC9 293 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 LCA5LO95447 670 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 MYOGP15173 224 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 OR1D2P34982 312 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 MAGEA1P43355 309 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 MAGEA11P43364 429 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 TUFMP49411 452 aaKnown RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 VAV2P52735 878 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 NAP1L1P55209 391 aaKnown RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 ROR1Q01973 937 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 C1QBPQ07021 282 aaKnown RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 PDCLQ13371 301 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 MRPL58Q14197 206 aaKnown RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 PTPN14Q15678 1187 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 MGAT5BQ3V5L5 792 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 FAM109BQ6ICB4 259 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 ACAD10Q6JQN1 1059 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 FAM171BQ6P995 826 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 RAD9BQ6WBX8 426 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 CCDC149Q6ZUS6 474 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 ZDHHC17Q8IUH5 632 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 FUKQ8N0W3 1084 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 ELMOD1Q8N336 334 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 LNX1Q8TBB1 728 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 STK32AQ8WU08 396 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 TFAP2BQ92481 460 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 DDX1Q92499 740 aaKnown RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 VCPIP1Q96JH7 1222 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 CEP295NLQ96MC4 621 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 ZNF830Q96NB3 372 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 ALS2CR12Q96Q35 445 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 DESI2Q9BSY9 194 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 DUSP16Q9BY84 665 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 KCNF1Q9H3M0 494 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 ALG13Q9NP73 1137 aaKnown RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 ACP6Q9NPH0 428 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 CRTAC1Q9NQ79 661 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 ADAM22Q9P0K1 906 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 AFF4Q9UHB7 1163 aaKnown RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 YBX2Q9Y2T7 364 aaKnown RBP11.83□□□□□ -0.52
SHMT2-220ENST00000555634 PCDHA13Q9Y5I0 950 aa11.83□□□□□ -0.52
SHMT2-220ENST00000555634 MYBPHLA2RUH7 354 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 MTMR11A4FU01 709 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 DDX3XO00571 662 aaKnown RBP eCLIP11.82□□□□□ -0.528e-15■■□□□ 14.3
SHMT2-220ENST00000555634 HCRTO43612 131 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 ATP2C2O75185 946 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 FBXO21O94952 628 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 CSPG5O95196 566 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 CXCL14O95715 111 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 EFEMP2O95967 443 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 GLUD1P00367 558 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 FTLP02792 175 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-220ENST00000555634 CYP1A1P04798 512 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-220ENST00000555634 OR4Q2P0C623 313 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 TMEM253P0C7T8 217 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 ABCB4P21439 1286 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 BDNFP23560 247 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 KLRC2P26717 231 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 CDH5P33151 784 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-220ENST00000555634 PLA2G4AP47712 749 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 ALDH1A3P47895 512 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 MAP3K7CLP57077 242 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 KIAA0319Q5VV43 1072 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 DENND1BQ6P3S1 775 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 DNAJC24Q6P3W2 148 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 PHF13Q86YI8 300 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-220ENST00000555634 SCN4BQ8IWT1 228 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 RHOT2Q8IXI1 618 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 ZNF461Q8TAF7 563 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 UBA3Q8TBC4 463 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 CPA5Q8WXQ8 436 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 PPP1R13BQ96KQ4 1090 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 HSFY1Q96LI6 401 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 PGLYRP2Q96PD5 576 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 RTP3Q9BQQ7 232 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 C11orf70Q9BRQ4 267 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 VN1R3Q9BXE9 311 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 B3GNT5Q9BYG0 378 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 PPP2R2CQ9Y2T4 447 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 IRAK3Q9Y616 596 aa11.82□□□□□ -0.52
SHMT2-220ENST00000555634 RTN3O95197 1032 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-220ENST00000555634 LRG1P02750 347 aa11.81□□□□□ -0.52
SHMT2-220ENST00000555634 LINC00271P0C7V0 271 aa11.81□□□□□ -0.52
SHMT2-220ENST00000555634 UNGP13051 313 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-220ENST00000555634 CHRNB2P17787 502 aa11.81□□□□□ -0.52
SHMT2-220ENST00000555634 RPL17P18621 184 aaKnown RBP11.81□□□□□ -0.52
SHMT2-220ENST00000555634 IGFBP6P24592 240 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms