RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 BTNL10A8MVZ5 291 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 PALMO75781 387 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 GABBR2O75899 941 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 CYP1A2P05177 515 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 RPL17P18621 184 aaKnown RBP10.78□□□□□ -0.68
SRP54-208ENST00000555557 BDNFP23560 247 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 MAP3K7CLP57077 242 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 PLCB3Q01970 1234 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 C1QBPQ07021 282 aaKnown RBP10.78□□□□□ -0.68
SRP54-208ENST00000555557 BST2Q10589 180 aaKnown RBP10.78□□□□□ -0.68
SRP54-208ENST00000555557 RASIP1Q5U651 963 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 PRPF38BQ5VTL8 546 aaKnown RBP10.78□□□□□ -0.68
SRP54-208ENST00000555557 SPRED2Q7Z698 418 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 FAM35AQ86V20 835 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 PHOSPHO2Q8TCD6 241 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 RIN2Q8WYP3 895 aaPredicted RBP10.78□□□□□ -0.68
SRP54-208ENST00000555557 PGLYRP2Q96PD5 576 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 NOX5Q96PH1 765 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 NUP85Q9BW27 656 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 DUSP16Q9BY84 665 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 TRIM7Q9C029 511 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 ZCWPW1Q9H0M4 648 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 SYNCQ9H7C4 482 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 KRT82Q9NSB4 513 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 SPG21Q9NZD8 308 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 NCANO14594 1321 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 ATP8B3O60423 1300 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 A0A0A6YYK5 440 aaPredicted RBP10.78□□□□□ -0.68
SRP54-208ENST00000555557 E5RJQ4 531 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 GOLGA8SH3BPF8 625 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 ENC1O14682 589 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 ADAM12O43184 909 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 AP1G2O75843 785 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 FAM200BP0CF97 657 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 NPR3P17342 541 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 BCAT1P54687 386 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 MAMLD1Q13495 774 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 USP41Q3LFD5 358 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 ZNF280DQ6N043 979 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 KIAA1841Q6NSI8 718 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 CLEC20AQ6ZU45 233 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 RNF168Q8IYW5 571 aaPredicted RBP10.78□□□□□ -0.68
SRP54-208ENST00000555557 RNF10Q8N5U6 811 aaKnown RBP10.78□□□□□ -0.68
SRP54-208ENST00000555557 TPCN2Q8NHX9 752 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 C18orf8Q96DM3 657 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 RNPC3Q96LT9 517 aaKnown RBP10.78□□□□□ -0.68
SRP54-208ENST00000555557 SMOQ99835 787 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 MTIF3Q9H2K0 278 aaKnown RBP10.78□□□□□ -0.68
SRP54-208ENST00000555557 HYOU1Q9Y4L1 999 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 CEP290O15078 2479 aa10.78□□□□□ -0.68
SRP54-208ENST00000555557 VWA8A3KMH1 1905 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 GRID2IPA4D2P6 1211 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 FGF18O76093 207 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 ARHGEF15O94989 841 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 CSPG5O95196 566 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 SOD2P04179 222 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 CALB1P05937 261 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 MYBL1P10243 752 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 LCP1P13796 627 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 CYP2F1P24903 491 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 DNAJB2P25686 324 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 RPL7AP62424 266 aaKnown RBP10.77□□□□□ -0.69
SRP54-208ENST00000555557 LIN9Q5TKA1 542 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 PLEKHA7Q6IQ23 1121 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 PIGZQ86VD9 579 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 XYLT1Q86Y38 959 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 SCUBE3Q8IX30 993 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 RHOT2Q8IXI1 618 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 VPS52Q8N1B4 723 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 KLHL23Q8NBE8 558 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 ZMIZ2Q8NF64 920 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 ZNF564Q8TBZ8 553 aaPredicted RBP10.77□□□□□ -0.69
SRP54-208ENST00000555557 AUTS2Q8WXX7 1259 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 CLP1Q92989 425 aaKnown RBP10.77□□□□□ -0.69
SRP54-208ENST00000555557 TRIM11Q96F44 468 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 PIWIL1Q96J94 861 aaKnown RBP10.77□□□□□ -0.69
SRP54-208ENST00000555557 VCPIP1Q96JH7 1222 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 MIS12Q9H081 205 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 CHST7Q9NS84 486 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 PCDHB12Q9Y5F1 795 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 CDY1Q9Y6F8 540 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 CDH23Q9H251 3354 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 TSC2P49815 1807 aa10.77□□□□□ -0.69
SRP54-208ENST00000555557 TCRBV5S1A1TA0A578 114 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 TMEM110-MUSTN1A8MSY1 372 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 XPO1O14980 1071 aaKnown RBP10.76□□□□□ -0.69
SRP54-208ENST00000555557 TBC1D4O60343 1298 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 BUB1BO60566 1050 aaPredicted RBP10.76□□□□□ -0.69
SRP54-208ENST00000555557 FTCDO95954 541 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 SETSIPP0DME0 302 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 CPB1P15086 417 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 GABRB2P47870 512 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 NDUFV1P49821 464 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 MAPRE1Q15691 268 aaKnown RBP10.76□□□□□ -0.69
SRP54-208ENST00000555557 OR6B2Q6IFH4 312 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 PPP1R2P3Q6NXS1 205 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 ANKS3Q6ZW76 656 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 TMEM110Q86TL2 294 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 CPNE8Q86YQ8 564 aa10.76□□□□□ -0.69
SRP54-208ENST00000555557 SPATA2LQ8IUW3 424 aaPredicted RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms