RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PUS7Q96PZ0 661 aaKnown RBP4.82□□□□□ -1.64
SCFD1-216ENST00000555550 EBF3Q9H4W6 596 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 NMRK2Q9NPI5 230 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 TUBA8Q9NY65 449 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-216ENST00000555550 PNMA8BQ9ULN7 279 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-216ENST00000555550 UNC5CO95185 931 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 RAB27AP51159 221 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 LRRC41Q15345 812 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 LONRF3Q496Y0 759 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 VPS53Q5VIR6 699 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 CATSPERGQ6ZRH7 1159 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 PPP1R32Q7Z5V6 425 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 C5orf34Q96MH7 638 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 RHOBTB2Q9BYZ6 727 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 PDGFCQ9NRA1 345 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 STAP2Q9UGK3 403 aa4.81□□□□□ -1.64
SCFD1-216ENST00000555550 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.81□□□□□ -1.64
SCFD1-216ENST00000555550 PPM1DO15297 605 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 AKAP10O43572 662 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 NXPH3O95157 252 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 GRPP07492 148 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 CCKARP32238 428 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 RGS19P49795 217 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 TOB1P50616 345 aaPredicted RBP4.8□□□□□ -1.64
SCFD1-216ENST00000555550 EPHB1P54762 984 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 SATB1Q01826 763 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 TCF15Q12870 199 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 LAMB3Q13751 1172 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 BOP1Q14137 746 aaKnown RBP4.8□□□□□ -1.64
SCFD1-216ENST00000555550 FGL2Q14314 439 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 DAZAP2Q15038 168 aaPredicted RBP4.8□□□□□ -1.64
SCFD1-216ENST00000555550 IQCB1Q15051 598 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 TEDDM1Q5T9Z0 273 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 PXDC1Q5TGL8 231 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 EMC10Q5UCC4 262 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 DAAM2Q86T65 1068 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 CHSY1Q86X52 802 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 DENND1CQ8IV53 801 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 TPH2Q8IWU9 490 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 CELF5Q8N6W0 485 aaKnown RBP4.8□□□□□ -1.64
SCFD1-216ENST00000555550 PNLDC1Q8NA58 520 aaKnown RBP4.8□□□□□ -1.64
SCFD1-216ENST00000555550 DIS3LQ8TF46 1054 aaKnown RBP4.8□□□□□ -1.64
SCFD1-216ENST00000555550 ATRIPQ8WXE1 791 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 MOGAT1Q96PD6 335 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 NELL2Q99435 816 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 SERHLQ9NQF3 203 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 HESX1Q9UBX0 185 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 PLEKHM1Q9Y4G2 1056 aa4.8□□□□□ -1.64
SCFD1-216ENST00000555550 H0YIZ8 118 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 MYO1CO00159 1063 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 ATXN1LP0C7T5 689 aaKnown RBP4.79□□□□□ -1.64
SCFD1-216ENST00000555550 HTR1BP28222 390 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 CYP2C18P33260 490 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 PXNP49023 591 aaPredicted RBP4.79□□□□□ -1.64
SCFD1-216ENST00000555550 ALDH9A1P49189 494 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 PLCD1P51178 756 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 LOXL3P58215 753 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 LINC00205P59089 165 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 LILRA4P59901 499 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 RAB1AP62820 205 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 PCID2Q5JVF3 399 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 ODR4Q5SWX8 454 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 ICE2Q659A1 982 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 SFRP4Q6FHJ7 346 aaPredicted RBP4.79□□□□□ -1.64
SCFD1-216ENST00000555550 IRF2BP2Q7Z5L9 587 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 KRT73Q86Y46 540 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.79□□□□□ -1.64
SCFD1-216ENST00000555550 AIFM3Q96NN9 605 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 MACROD1Q9BQ69 325 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 RTFDC1Q9BY42 306 aaPredicted RBP4.79□□□□□ -1.64
SCFD1-216ENST00000555550 SLC12A5Q9H2X9 1139 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 ZIM2Q9NZV7 527 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 TMX2Q9Y320 296 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 AFG3L2Q9Y4W6 797 aa4.79□□□□□ -1.64
SCFD1-216ENST00000555550 IGKV2D-30A0A075B6S6 120 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 CYP2D7A0A087X1C5 515 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 MYO1FO00160 1098 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 QSOX1O00391 747 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 ADAMTS3O15072 1205 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 UBXN7O94888 489 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 EEFSECP57772 596 aaKnown RBP4.78□□□□□ -1.64
SCFD1-216ENST00000555550 TRIP6Q15654 476 aaKnown RBP4.78□□□□□ -1.64
SCFD1-216ENST00000555550 Q4G0T1 1027 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 AARS2Q5JTZ9 985 aaKnown RBP4.78□□□□□ -1.64
SCFD1-216ENST00000555550 LCE1EQ5T753 118 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 ZNF618Q5T7W0 954 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 ARHGAP40Q5TG30 622 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 NAPRTQ6XQN6 538 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 GALNT16Q8N428 558 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 NANOGP1Q8N7R0 232 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 PLBD2Q8NHP8 589 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 TBC1D5Q92609 795 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 TMEM79Q9BSE2 394 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 CDH19Q9H159 772 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 PIH1D1Q9NWS0 290 aaKnown RBP4.78□□□□□ -1.64
SCFD1-216ENST00000555550 DLL3Q9NYJ7 618 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 SERTAD3Q9UJW9 196 aa4.78□□□□□ -1.64
SCFD1-216ENST00000555550 A0A1W2PPL8 197 aa4.77□□□□□ -1.65
SCFD1-216ENST00000555550 MYMKA6NI61 221 aa4.77□□□□□ -1.65
SCFD1-216ENST00000555550 DCLK1O15075 740 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms