RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ADAM9Q13443 819 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 FOXR2Q6PJQ5 311 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 CELF5Q8N6W0 485 aaKnown RBP17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 OR6B3Q8NGW1 331 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 TNIP3Q96KP6 325 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 LRRC3BQ96PB8 259 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 SMYD3Q9H7B4 428 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 NXF1Q9UBU9 619 aaKnown RBP17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 MAPK8IP1Q9UQF2 711 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 PCDHA5Q9Y5H7 936 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 TICRRQ7Z2Z1 1910 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 A8MXQ7 604 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 H0Y858 1186 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 DPYSL4O14531 572 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 NCAM2O15394 837 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 SLC16A3O15427 465 aaKnown RBP17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 PDGFRBP09619 1106 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 KRT13P13646 458 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 TCF3P15923 654 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 BDNFP23560 247 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 PPP1R2P41236 205 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 PRCPP42785 496 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 PPP3CCP48454 512 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 LRRC63Q05C16 580 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 ANGPT1Q15389 498 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 MDH1BQ5I0G3 518 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 MAMSTRQ6ZN01 415 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 UNC93AQ86WB7 457 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 YAF2Q8IY57 180 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 BPIFB1Q8TDL5 484 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 SMARCE1Q969G3 411 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 BCO2Q9BYV7 579 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 FAM124BQ9H5Z6 455 aaPredicted RBP17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 C8orf33Q9H7E9 229 aaPredicted RBP17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 F5P12259 2224 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 VPS13AQ96RL7 3174 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 COL4A3Q01955 1670 aa17.1■□□□□ 0.33
CCDC88C-209ENST00000554872 USP34Q70CQ2 3546 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 CETN3O15182 167 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 HLA-DRAP01903 254 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 DCNP07585 359 aaKnown RBP17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 TARSP26639 723 aaKnown RBP17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 AVPR1AP37288 418 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 PIK3CAP42336 1068 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 ASPAP45381 313 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 MRE11P49959 708 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 PDE6CP51160 858 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 CYP27A1Q02318 531 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 INCA1Q0VD86 236 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 SDHAF4Q5VUM1 108 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 DENND5BQ6ZUT9 1274 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 SCN4BQ8IWT1 228 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 SMYD4Q8IYR2 804 aaPredicted RBP17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 ADSSL1Q8N142 457 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 CRYBG2Q8N1P7 616 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 KIAA1958Q8N8K9 716 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 ATOH1Q92858 354 aaPredicted RBP17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 IMPG2Q9BZV3 1241 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 SDCBP2Q9H190 292 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 DPEP3Q9H4B8 488 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 CYP3A43Q9HB55 503 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 TMEM8AQ9HCN3 771 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 TDP1Q9NUW8 608 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 PIAS3Q9Y6X2 628 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 ATP8B3O60423 1300 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 PATJQ8NI35 1801 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 MYO15AQ9UKN7 3530 aa17.09■□□□□ 0.33
CCDC88C-209ENST00000554872 FAM170BA6NMN3 283 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 STX10O60499 249 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 ANXA13P27216 316 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 GRIK1P39086 918 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 CDR1P51861 262 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 FKBP3Q00688 224 aaKnown RBP17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 PPP3CAQ08209 521 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 FZD5Q13467 585 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 UBXN2BQ14CS0 331 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 C1orf210Q8IVY1 113 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 MAB21L3Q8N8X9 362 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 USP13Q92995 863 aaPredicted RBP17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 B3GNT5Q9BYG0 378 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 THG1LQ9NWX6 298 aaKnown RBP17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 GCNT4Q9P109 453 aa17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 MAGED2Q9UNF1 606 aaPredicted RBP17.08■□□□□ 0.32
CCDC88C-209ENST00000554872 F8VP50 259 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 KINO60870 393 aaKnown RBP17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 TRIM49P0CI25 452 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 TRIM49CP0CI26 452 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 EPB41P11171 864 aaKnown RBP17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 CDH8P55286 799 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 ZNF528Q3MIS6 628 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 KRT39Q6A163 491 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 TXNDC8Q6A555 127 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 RALGPS2Q86X27 583 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 STKLD1Q8NE28 680 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 CSGALNACT1Q8TDX6 532 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 TAS1R2Q8TE23 839 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 OVCA2Q8WZ82 227 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 PHOX2BQ99453 314 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 TSG101Q99816 390 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 FAM83CQ9BQN1 747 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms