RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 PTPRJQ12913 1337 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 STX6O43752 255 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 ATP2C2O75185 946 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 TADA3O75528 432 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 NOL4O94818 638 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 TMEM191BP0C7N4 346 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 ARSAP15289 507 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 DDX6P26196 483 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP28-215ENST00000545608 HOXD13P35453 343 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 AVPR1AP37288 418 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 RPL10AP62906 217 aaKnown RBP9.08□□□□□ -0.96
USP28-215ENST00000545608 MYL7Q01449 175 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 SPEM2Q0P670 501 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 RUNX3Q13761 415 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 SIM2Q14190 667 aaPredicted RBP9.08□□□□□ -0.96
USP28-215ENST00000545608 STK38Q15208 465 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 SOWAHAQ2M3V2 549 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 LAIR1Q6GTX8 287 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 FSTL4Q6MZW2 842 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 PKN3Q6P5Z2 889 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 LONP2Q86WA8 852 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 CBWD2Q8IUF1 395 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 CCDC65Q8IXS2 484 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 ADGRF2Q8IZF7 708 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 TMEM86AQ8N2M4 240 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 SYNPOQ8N3V7 929 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 TOP6BLQ8N6T0 577 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 LINC00301Q8NCQ3 95 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 MRPS31Q92665 395 aaKnown RBP9.08□□□□□ -0.96
USP28-215ENST00000545608 ZSCAN16Q9H4T2 348 aaPredicted RBP9.08□□□□□ -0.96
USP28-215ENST00000545608 EBF3Q9H4W6 596 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 FBRSL1Q9HCM7 1045 aaKnown RBP9.08□□□□□ -0.96
USP28-215ENST00000545608 ABCB6Q9NP58 842 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 TDP1Q9NUW8 608 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 INTS13Q9NVM9 706 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 ZMYM5Q9UJ78 669 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 RAB23Q9ULC3 237 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 ANK1P16157 1881 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 TSC2P49815 1807 aa9.08□□□□□ -0.96
USP28-215ENST00000545608 ZNF292O60281 2723 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 ZNF233A6NK53 670 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 SOBPA7XYQ1 873 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 POM121CA8CG34 1229 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 PRR5-ARHGAP8B1AHC4 643 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 TRDMT1O14717 391 aaKnown RBP9.07□□□□□ -0.96
USP28-215ENST00000545608 SPTLC2O15270 562 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 RETP07949 1114 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 LMO2P25791 158 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 HOXA6P31267 233 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 CNR2P34972 360 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 LHX1P48742 406 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 ARHGAP8P85298 464 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 LMNB2Q03252 620 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 TMEM196Q5HYL7 178 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 NAIF1Q69YI7 327 aaPredicted RBP9.07□□□□□ -0.96
USP28-215ENST00000545608 FAM171BQ6P995 826 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 DPH6Q7L8W6 267 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 LIMS2Q7Z4I7 341 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 SPATA2LQ8IUW3 424 aaPredicted RBP9.07□□□□□ -0.96
USP28-215ENST00000545608 SCN4BQ8IWT1 228 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 SPATA18Q8TC71 538 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 KBTBD7Q8WVZ9 684 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 HPDLQ96IR7 371 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 ANKRD36BP1Q96IX9 119 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 ZFRQ96KR1 1074 aaKnown RBP9.07□□□□□ -0.96
USP28-215ENST00000545608 MYRFLQ96LU7 910 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 SLC22A12Q96S37 553 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 CYP2S1Q96SQ9 504 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 TRIM9Q9C026 710 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 TNMDQ9H2S6 317 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 KIF9Q9HAQ2 790 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 KBTBD4Q9NVX7 518 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 POLR3BQ9NW08 1133 aaPredicted RBP9.07□□□□□ -0.96
USP28-215ENST00000545608 HSPBP1Q9NZL4 362 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 UXTQ9UBK9 157 aaPredicted RBP9.07□□□□□ -0.96
USP28-215ENST00000545608 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.07□□□□□ -0.96
USP28-215ENST00000545608 CACNA1AO00555 2505 aa9.07□□□□□ -0.96
USP28-215ENST00000545608 DCDC2BA2VCK2 349 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 CFAP99D6REC4 459 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 K7ELQ4 463 aaPredicted RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 TK2O00142 265 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 KIAA0391O15091 583 aaKnown RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 TGFB1I1O43294 461 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 PPP6R2O75170 966 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 CST3P01034 146 aaPredicted RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 EGFP01133 1207 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 PDGFRBP09619 1106 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 SDHBP21912 280 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 PCSK1P29120 753 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 PXNP49023 591 aaPredicted RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 GALK1P51570 392 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 PSMC1P62191 440 aaKnown RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 FAM160A1Q05DH4 1040 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 GRSF1Q12849 480 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP28-215ENST00000545608 MYO1EQ12965 1108 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 ZNF268Q14587 947 aaPredicted RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 MTF1Q14872 753 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 SURF1Q15526 300 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 DUOXA2Q1HG44 320 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 CFAP221Q4G0U5 840 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms