RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 UGT1A10Q9HAW8 530 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 UGT1A8Q9HAW9 530 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 ADGRA2Q96PE1 1338 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 MIPP30301 263 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 LAMTOR4Q0VGL1 99 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 MOGSQ13724 837 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 TNFAIP1Q13829 316 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 BMPR2Q13873 1038 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 KBTBD12Q3ZCT8 623 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 ANKRD20A2Q5SQ80 823 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 ANKRD20A1Q5TYW2 823 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 ANKRD20A3Q5VUR7 823 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 SLFN12LQ6IEE8 588 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 SERAC1Q96JX3 654 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 PSMC3IPQ9P2W1 217 aaPredicted RBP15.77■□□□□ 0.11
USP28-214ENST00000545540 ZNF646O15015 1829 aaPredicted RBP15.77■□□□□ 0.11
USP28-214ENST00000545540 E2F8A0AVK6 867 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 MSCO60682 206 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 TCEA3O75764 348 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 PRKCBP05771 671 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 NFICP08651 508 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 BGNP21810 368 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 PEX19P40855 299 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 GEMIN4P57678 1058 aaKnown RBP15.77■□□□□ 0.11
USP28-214ENST00000545540 FAAP100Q0VG06 881 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 NR1H3Q13133 447 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 TRIM72Q6ZMU5 477 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 CCDC125Q86Z20 511 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 DTX3LQ8TDB6 740 aa15.77■□□□□ 0.11
USP28-214ENST00000545540 SLC7A6OSQ96CW6 309 aaPredicted RBP15.77■□□□□ 0.11
USP28-214ENST00000545540 COL2A1P02458 1487 aaPredicted RBP15.76■□□□□ 0.11
USP28-214ENST00000545540 C3orf70A6NLC5 250 aaPredicted RBP15.76■□□□□ 0.11
USP28-214ENST00000545540 ATP2A1O14983 1001 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 TYROBPO43914 113 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 CALB1P05937 261 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 IQCF3P0C7M6 154 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 PYGBP11216 843 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 ATP2A2P16615 1042 aaKnown RBP15.76■□□□□ 0.11
USP28-214ENST00000545540 KDELR1P24390 212 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 RAD23BP54727 409 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 MORF4L2Q15014 288 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 PDK4Q16654 411 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 RNF43Q68DV7 783 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 DARS2Q6PI48 645 aaKnown RBP15.76■□□□□ 0.11
USP28-214ENST00000545540 MIEF2Q96C03 454 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 CPB2Q96IY4 423 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 EBF2Q9HAK2 575 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 ZFP69BQ9UJL9 534 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 STYXL1Q9Y6J8 313 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 USH1CQ9Y6N9 552 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 NEBLO76041 1014 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 ASPAP45381 313 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 GHRHRQ02643 423 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 FAM102AQ5T9C2 384 aaPredicted RBP15.76■□□□□ 0.11
USP28-214ENST00000545540 GBP7Q8N8V2 638 aaPredicted RBP15.76■□□□□ 0.11
USP28-214ENST00000545540 TRPM4Q8TD43 1214 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 PGLYRP2Q96PD5 576 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 NUDCD1Q96RS6 583 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.76■□□□□ 0.11
USP28-214ENST00000545540 HEY2Q9UBP5 337 aa15.76■□□□□ 0.11
USP28-214ENST00000545540 TCRBV5S1A1TA0A578 114 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 KBTBD13C9JR72 458 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 H7C0C1 242 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 CYB561D2O14569 222 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 DKC1O60832 514 aaKnown RBP eCLIP15.75■□□□□ 0.11
USP28-214ENST00000545540 ITGB3P05106 788 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 GMPRP36959 345 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 ATP5OP48047 213 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 CDH6P55285 790 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 LMNB2Q03252 620 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 ZBTB16Q05516 673 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 APBB1IPQ7Z5R6 666 aaPredicted RBP15.75■□□□□ 0.11
USP28-214ENST00000545540 BRSK2Q8IWQ3 736 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 PPM1NQ8N819 430 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 RDM1Q8NG50 284 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 SLC35B2Q8TB61 432 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 C10orf82Q8WW14 230 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 HEXIM2Q96MH2 286 aaKnown RBP15.75■□□□□ 0.11
USP28-214ENST00000545540 PEBP4Q96S96 227 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 CXCL16Q9H2A7 254 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 BTBD7Q9P203 1132 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 KANSL3Q9P2N6 904 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 M0QYV0 167 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 FARP2O94887 1054 aaPredicted RBP15.75■□□□□ 0.11
USP28-214ENST00000545540 ZNF132P52740 706 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 SLC25A11Q02978 314 aaKnown RBP15.75■□□□□ 0.11
USP28-214ENST00000545540 CDHR3Q6ZTQ4 885 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 VCPIP1Q96JH7 1222 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 ARL8BQ9NVJ2 186 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 MAFGO15525 162 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 LDHAP00338 332 aaKnown RBP15.75■□□□□ 0.11
USP28-214ENST00000545540 SERPINB3P29508 390 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 TAF11Q15544 211 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 ZC3H12AQ5D1E8 599 aaKnown RBP15.75■□□□□ 0.11
USP28-214ENST00000545540 PPP6R3Q5H9R7 873 aaPredicted RBP15.75■□□□□ 0.11
USP28-214ENST00000545540 DSTYKQ6XUX3 929 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 MTMR14Q8NCE2 650 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 DENND2DQ9H6A0 471 aaPredicted RBP15.75■□□□□ 0.11
USP28-214ENST00000545540 SLC17A6Q9P2U8 582 aa15.75■□□□□ 0.11
USP28-214ENST00000545540 E5RJQ4 531 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 160 ms