RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	VSTM1	Q6UX27	236 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	TCEAL8	Q8IYN2	117 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	TTC9B	Q8N6N2	239 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	EFHB	Q8N7U6	833 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	ANKRD52	Q8NB46	1076 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	GIPC2	Q8TF65	315 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	SYN2	Q92777	582 aa	Predicted RBP	10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	GUCD1	Q96NT3	240 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	ZSWIM1	Q9BR11	485 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	DUSP16	Q9BY84	665 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	MTMR10	Q9NXD2	777 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	CLDND1	Q9NY35	253 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	AIPL1	Q9NZN9	384 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	IMPACT	Q9P2X3	320 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	FBXW11	Q9UKB1	542 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	TSPAN16	Q9UKR8	245 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	LAMA2	P24043	3122 aa	Known RBP	10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	ANK1	P16157	1881 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	LAMA3	Q16787	3333 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545		F8VP50	259 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	TRIM66	O15016	1216 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	CCL16	O15467	120 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	LINC01565	O15544	149 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	ZMYND10	O75800	440 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	VNN2	O95498	520 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	C1R	P00736	705 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	SERPING1	P05155	500 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	MME	P08473	750 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	NPR3	P17342	541 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	MAGEA11	P43364	429 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	GPR15	P49685	360 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	BCAT1	P54687	386 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	EPHB3	P54753	998 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	RBM10	P98175	930 aa	Known RBP	10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	CDR2	Q01850	454 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	TWF1	Q12792	350 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	IFRD2	Q12894	506 aa	Predicted RBP	10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	PLD1	Q13393	1074 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	PAQR9	Q6ZVX9	377 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	IRF2BP2	Q7Z5L9	587 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	NOP9	Q86U38	636 aa	Known RBP	10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	VPS36	Q86VN1	386 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	ZNF677	Q86XU0	584 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	PASD1	Q8IV76	773 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	ELMOD1	Q8N336	334 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	C12orf76	Q8N812	135 aa	Predicted RBP	10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	GPR152	Q8TDT2	470 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	EPS8L1	Q8TE68	723 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	HDAC7	Q8WUI4	952 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	SLC20A1	Q8WUM9	679 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	SECISBP2L	Q93073	1101 aa	Known RBP	10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	ZNF512	Q96ME7	567 aa	Predicted RBP	10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	KCNK16	Q96T55	309 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	AGPAT1	Q99943	283 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	APOL5	Q9BWW9	433 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	CRISPLD1	Q9H336	500 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	HAUS4	Q9H6D7	363 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	PIDD1	Q9HB75	910 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	DMAP1	Q9NPF5	467 aa	Predicted RBP	10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	DZANK1	Q9NVP4	752 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	YIPF1	Q9Y548	306 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	INSL5	Q9Y5Q6	135 aa		10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	BZW2	Q9Y6E2	419 aa	Known RBP	10.75	□□□□□ -0.69
CPSF7-221	ENST00000543545	CCDC195	A0A1B0GUA6	201 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	FAM170A	A1A519	330 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	XYLB	O75191	536 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	RFPL2	O75678	378 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	PTMA	P06454	111 aa	Known RBP	10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	CFH	P08603	1231 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	SETSIP	P0DME0	302 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	RGS7	P49802	495 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	CACNA2D1	P54289	1103 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	PDE4C	Q08493	712 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	BST2	Q10589	180 aa	Known RBP	10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	ADAM15	Q13444	863 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	E4F1	Q66K89	784 aa	Predicted RBP	10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	TMC5	Q6UXY8	1006 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	CLEC20A	Q6ZU45	233 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	TTC30A	Q86WT1	665 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	TMEM35B	Q8NCS4	154 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	VN1R2	Q8NFZ6	395 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	C8orf48	Q96LL4	319 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	NOX5	Q96PH1	765 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	DNAJC7	Q99615	494 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	SMO	Q99835	787 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	DEF6	Q9H4E7	631 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	SYNC	Q9H7C4	482 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	LRRC4	Q9HBW1	653 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	ST7	Q9NRC1	585 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	ABHD10	Q9NUJ1	306 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	HSFX1	Q9UBD0	423 aa		10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	NOCT	Q9UK39	431 aa	Known RBP	10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	MAGED2	Q9UNF1	606 aa	Predicted RBP	10.74	□□□□□ -0.69
CPSF7-221	ENST00000543545	MYO9B	Q13459	2157 aa		10.73	□□□□□ -0.69
CPSF7-221	ENST00000543545	MYO7A	Q13402	2215 aa		10.73	□□□□□ -0.69
CPSF7-221	ENST00000543545	BEST1	O76090	585 aa		10.73	□□□□□ -0.69
CPSF7-221	ENST00000543545	HNRNPA1	P09651	372 aa	Known RBP eCLIP	10.73	□□□□□ -0.69
CPSF7-221	ENST00000543545	PRKCI	P41743	596 aa		10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms