RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 STPG1Q5TH74 334 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 LIMS2Q7Z4I7 341 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 SCN4BQ8IWT1 228 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 ABCA7Q8IZY2 2146 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 LRRC52Q8N7C0 313 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 SH3RF2Q8TEC5 729 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 MYLPFQ96A32 169 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 ABCB6Q9NP58 842 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 OLFML3Q9NRN5 406 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 TMEM30AQ9NV96 361 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 DUS2Q9NX74 493 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 SEL1LQ9UBV2 794 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 ZMYM5Q9UJ78 669 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 SRPRBQ9Y5M8 271 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 AKAP13Q12802 2813 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 NUP205Q92621 2012 aa16.58■□□□□ 0.25
CLSTN3-213ENST00000541953 IDEP14735 1019 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 HNRNPLP14866 589 aaKnown RBP eCLIP16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 GAP43P17677 238 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 DRD1P21728 446 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 GARTP22102 1010 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 PMLP29590 882 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 OPRD1P41143 372 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 CACNA2D1P54289 1103 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 RPL10AP62906 217 aaKnown RBP16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 MYL7Q01449 175 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 DMC1Q14565 340 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 CFAP221Q4G0U5 840 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 RRAGBQ5VZM2 374 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 CC2D1AQ6P1N0 951 aaPredicted RBP16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 FAM171BQ6P995 826 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 CBWD2Q8IUF1 395 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 TMEM86AQ8N2M4 240 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 C12orf50Q8NA57 414 aaPredicted RBP16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 CD101Q93033 1021 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 LOXL4Q96JB6 756 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 ZC3H10Q96K80 434 aaKnown RBP16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 ITGA11Q9UKX5 1188 aa16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.58■□□□□ 0.24
CLSTN3-213ENST00000541953 TRAV19A0A0A6YYK7 116 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 CHRM1P11229 460 aaPredicted RBP16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 IFNAR2P48551 515 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 CUL4AQ13619 759 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 IL31Q6EBC2 164 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 SV2BQ7L1I2 683 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 SYT13Q7L8C5 426 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 SPATA2LQ8IUW3 424 aaPredicted RBP16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 CPA6Q8N4T0 437 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 CAMKK1Q8N5S9 505 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 TOP6BLQ8N6T0 577 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 USP28Q96RU2 1077 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 SYT15Q9BQS2 421 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 TPSD1Q9BZJ3 242 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 INTS13Q9NVM9 706 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 RALYQ9UKM9 306 aaKnown RBP16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 MYOFQ9NZM1 2061 aa16.57■□□□□ 0.24
CLSTN3-213ENST00000541953 SOBPA7XYQ1 873 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 GIPC1O14908 333 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 ATG13O75143 517 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 USP17L7P0C7H9 530 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 BCKDHBP21953 392 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 BDNFP23560 247 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 SEC13P55735 322 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 RBP5P82980 135 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 PSMD2Q13200 908 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 SYCP3Q8IZU3 236 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 MRPL45Q9BRJ2 306 aaKnown RBP16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 TMEM206Q9H813 350 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 PANK4Q9NVE7 773 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 UXTQ9UBK9 157 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 CCDC39Q9UFE4 941 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 EXOC7Q9UPT5 735 aa16.56■□□□□ 0.24
CLSTN3-213ENST00000541953 THADAQ6YHU6 1953 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 TNRC6BQ9UPQ9 1833 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 PATE3B3GLJ2 98 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 K7EQS6 105 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 AKAP3O75969 853 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 APBB3O95704 486 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 PDGFRBP09619 1106 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 TMEM191BP0C7N4 346 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 STAT6P42226 847 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 GPD1LQ8N335 351 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 PDILTQ8N807 584 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 USP33Q8TEY7 942 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 CACTINQ8WUQ7 758 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 ATP2A3Q93084 1043 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 FUBP3Q96I24 572 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 HPDLQ96IR7 371 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 RNF38Q9H0F5 515 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 GZF1Q9H116 711 aaPredicted RBP16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 ZDHHC4Q9NPG8 344 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 ARHGAP26Q9UNA1 814 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 PCDHB13Q9Y5F0 798 aa16.55■□□□□ 0.24
CLSTN3-213ENST00000541953 LNP1A1A4G5 178 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 LEFTY2O00292 366 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 KCNK5O95279 499 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 LDHAP00338 332 aaKnown RBP16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 CYP17A1P05093 508 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 HDCP19113 662 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 SYT1P21579 422 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms