RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 FOXP1Q9H334 677 aaPredicted RBP12.72□□□□□ -0.37
COPA-205ENST00000541366 CPSF3Q9UKF6 684 aaKnown RBP12.72□□□□□ -0.37
COPA-205ENST00000541366 DSEQ9UL01 958 aa12.72□□□□□ -0.37
COPA-205ENST00000541366 SGK1O00141 431 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 TNFRSF10BO14763 440 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 SCAMP3O14828 347 aaKnown RBP12.71□□□□□ -0.37
COPA-205ENST00000541366 HCRTO43612 131 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 SEC24BO95487 1268 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 CFIP05156 583 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 USP17L7P0C7H9 530 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 CSH1P0DML2 217 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 CSH2P0DML3 217 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 CHRM1P11229 460 aaPredicted RBP12.71□□□□□ -0.37
COPA-205ENST00000541366 ACAT1P24752 427 aaKnown RBP12.71□□□□□ -0.37
COPA-205ENST00000541366 SLC6A11P48066 632 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 ACOT2P49753 483 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 TAF6P49848 677 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 SLC12A3P55017 1021 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 SCAPQ12770 1279 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 ARSHQ5FYA8 562 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 TXNDC5Q8NBS9 432 aaKnown RBP12.71□□□□□ -0.37
COPA-205ENST00000541366 CAMK1GQ96NX5 476 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 BBC3Q96PG8 261 aaPredicted RBP12.71□□□□□ -0.37
COPA-205ENST00000541366 TIPINQ9BVW5 301 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 DPP3Q9NY33 737 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 GCNT4Q9P109 453 aa12.71□□□□□ -0.37
COPA-205ENST00000541366 HELZ2Q9BYK8 2649 aaKnown RBP12.71□□□□□ -0.38
COPA-205ENST00000541366 CEP192Q8TEP8 1941 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 TRAV19A0A0A6YYK7 116 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 A0A0B4J269 797 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 FAM221BA6H8Z2 402 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 ANKRD63C9JTQ0 380 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 KLF8O95600 359 aaPredicted RBP12.7□□□□□ -0.38
COPA-205ENST00000541366 TIE1P35590 1138 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 SMARCB1Q12824 385 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 NR1H3Q13133 447 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 MAP7D1Q3KQU3 841 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 SLC23A3Q6PIS1 610 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 RAB44Q7Z6P3 723 aaPredicted RBP12.7□□□□□ -0.38
COPA-205ENST00000541366 DCP1BQ8IZD4 617 aaKnown RBP12.7□□□□□ -0.38
COPA-205ENST00000541366 PNPLA1Q8N8W4 532 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 SYT2Q8N9I0 419 aaPredicted RBP12.7□□□□□ -0.38
COPA-205ENST00000541366 IL17RCQ8NAC3 791 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 HMGB4Q8WW32 186 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 FAM84AQ96KN4 292 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 IKZF4Q9H2S9 585 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 TMEM206Q9H813 350 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 PILRBQ9UKJ0 227 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.7□□□□□ -0.38
COPA-205ENST00000541366 PLXNB3Q9ULL4 1909 aa12.7□□□□□ -0.38
COPA-205ENST00000541366 PCDH15Q96QU1 1955 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 ADAM23O75077 832 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 NOL4O94818 638 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 PLA2G4BP0C869 781 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 CD59P13987 128 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 GNL2Q13823 731 aaKnown RBP12.69□□□□□ -0.38
COPA-205ENST00000541366 KYAT1Q16773 422 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 LYSMD4Q5XG99 296 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 C12orf40Q86WS4 652 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 CCDC83Q8IWF9 413 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 WHAMMQ8TF30 809 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 SPACA7Q96KW9 195 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 TSPAN18Q96SJ8 248 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 RAB34Q9BZG1 259 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 BCCIPQ9P287 314 aaKnown RBP eCLIP12.69□□□□□ -0.38
COPA-205ENST00000541366 GTF3C4Q9UKN8 822 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 NOL7Q9UMY1 257 aaKnown RBP12.69□□□□□ -0.38
COPA-205ENST00000541366 L1RE1Q9UN81 338 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 STK24Q9Y6E0 443 aa12.69□□□□□ -0.38
COPA-205ENST00000541366 HELZP42694 1942 aaKnown RBP12.68□□□□□ -0.38
COPA-205ENST00000541366 URB1O60287 2271 aaKnown RBP12.68□□□□□ -0.38
COPA-205ENST00000541366 KPNA7A9QM74 516 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 UPK3BL1B0FP48 263 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 UPK3BL2E5RIL1 263 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 H0Y626 953 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 K7ENM7 598 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 TULP1O00294 542 aaPredicted RBP12.68□□□□□ -0.38
COPA-205ENST00000541366 ALDH1A2O94788 518 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 TRIM16O95361 564 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 NFATC1O95644 943 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 PIGRP01833 764 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 CYP17A1P05093 508 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 HDCP19113 662 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 PAX3P23760 479 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 TRAPPC10P48553 1259 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 NEK4P51957 841 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 ATXN3P54252 364 aaPredicted RBP12.68□□□□□ -0.38
COPA-205ENST00000541366 WNT7BP56706 349 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 MRPS21P82921 87 aaKnown RBP12.68□□□□□ -0.38
COPA-205ENST00000541366 TSPY1Q01534 308 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 DHX8Q14562 1220 aaKnown RBP12.68□□□□□ -0.38
COPA-205ENST00000541366 OSTM1Q86WC4 334 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 SCN4BQ8IWT1 228 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 CD302Q8IX05 232 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 PGBD3Q8N328 593 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 PDCL2Q8N4E4 241 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 HDDC3Q8N4P3 179 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 MINDY1Q8N5J2 469 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 FBXO18Q8NFZ0 1043 aa12.68□□□□□ -0.38
COPA-205ENST00000541366 MDM1Q8TC05 714 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms