RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 MRPL58Q14197 206 aaKnown RBP18.71■□□□□ 0.59
CLIP1-215ENST00000541108 RPS6KA1Q15418 735 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 FAM171A1Q5VUB5 890 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 FUT10Q6P4F1 479 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 PSRC1Q6PGN9 363 aaPredicted RBP18.71■□□□□ 0.59
CLIP1-215ENST00000541108 HES6Q96HZ4 224 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 OXCT2Q9BYC2 517 aaPredicted RBP18.71■□□□□ 0.59
CLIP1-215ENST00000541108 B3GNT5Q9BYG0 378 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 GPR62Q9BZJ7 368 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 UBXN6Q9BZV1 441 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 HYOU1Q9Y4L1 999 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 COL4A6Q14031 1691 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 EFEMP2O95967 443 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 KRT3P12035 628 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 MESDQ14696 234 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 CYP4A22Q5TCH4 519 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 ZNF365Q70YC5 407 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 OR10T2Q8NGX3 314 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 KCTD13Q8WZ19 329 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 MED10Q9BTT4 135 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 SELENOOQ9BVL4 669 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 GOLPH3Q9H4A6 298 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 HCSTQ9UBK5 93 aa18.7■□□□□ 0.58
CLIP1-215ENST00000541108 MIF4GDA9UHW6 222 aaKnown RBP18.69■□□□□ 0.58
CLIP1-215ENST00000541108 E5RJQ4 531 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 FAM200BP0CF97 657 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 BTG3Q14201 252 aaPredicted RBP18.69■□□□□ 0.58
CLIP1-215ENST00000541108 VARS2Q5ST30 1063 aaKnown RBP18.69■□□□□ 0.58
CLIP1-215ENST00000541108 LLGL2Q6P1M3 1020 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 DCUN1D2Q6PH85 259 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 CLEC20AQ6ZU45 233 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 PHLDB2Q86SQ0 1253 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 C7orf61Q8IZ16 206 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 FNIP1Q8TF40 1166 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 SMARCD1Q96GM5 515 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 CSNK1G1Q9HCP0 422 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 IP6K2Q9UHH9 426 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 OR6C75A6NL08 312 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 NT5C1B-RDH14C9J2C7 533 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 TULP2O00295 520 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 CES2O00748 559 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 SCNN1AP37088 669 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 RPL7AP62424 266 aaKnown RBP18.69■□□□□ 0.58
CLIP1-215ENST00000541108 WHAMMP3Q1A5X7 153 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 KCNT2Q6UVM3 1135 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 C4orf50Q6ZRC1 276 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 FAM35AQ86V20 835 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 DCP1BQ8IZD4 617 aaKnown RBP18.69■□□□□ 0.58
CLIP1-215ENST00000541108 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.69■□□□□ 0.58
CLIP1-215ENST00000541108 IGSF21Q96ID5 467 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 OSBPL9Q96SU4 736 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 RNF14Q9UBS8 474 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 TJP2Q9UDY2 1190 aa18.69■□□□□ 0.58
CLIP1-215ENST00000541108 CLDN5O00501 218 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 RIOK3O14730 519 aaKnown RBP18.68■□□□□ 0.58
CLIP1-215ENST00000541108 NCK2O43639 380 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 PROSCO94903 275 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 GJB5O95377 273 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 LAG3P18627 525 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 COMTP21964 271 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 MAN1A1P33908 653 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 NFE2Q16621 373 aaPredicted RBP18.68■□□□□ 0.58
CLIP1-215ENST00000541108 CCDC142Q17RM4 750 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 TMEM240Q5SV17 173 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 ZNF280DQ6N043 979 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 PIGZQ86VD9 579 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 LRRTM3Q86VH5 581 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 TMEM173Q86WV6 379 aaPredicted RBP18.68■□□□□ 0.58
CLIP1-215ENST00000541108 RNF168Q8IYW5 571 aaPredicted RBP18.68■□□□□ 0.58
CLIP1-215ENST00000541108 MYLPFQ96A32 169 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 BTBD6Q96KE9 485 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 MCEEQ96PE7 176 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 ZCWPW1Q9H0M4 648 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 KRT82Q9NSB4 513 aa18.68■□□□□ 0.58
CLIP1-215ENST00000541108 VWA8A3KMH1 1905 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 ZBBXA8MT70 800 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 H7C4K7 107 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 RGS7P49802 495 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 HTRA4P83105 476 aaPredicted RBP18.67■□□□□ 0.58
CLIP1-215ENST00000541108 SLC6A3Q01959 620 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 PIGHQ14442 188 aaPredicted RBP18.67■□□□□ 0.58
CLIP1-215ENST00000541108 FAM117BQ6P1L5 589 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 ANKS3Q6ZW76 656 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 ARCQ7LC44 396 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 CEP57Q86XR8 500 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 CD101Q93033 1021 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 FUBP3Q96I24 572 aaKnown RBP eCLIP18.67■□□□□ 0.58
CLIP1-215ENST00000541108 ZNF558Q96NG5 402 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 YME1L1Q96TA2 773 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 TTPALQ9BTX7 342 aa18.67■□□□□ 0.58
CLIP1-215ENST00000541108 PACSIN2Q9UNF0 486 aaPredicted RBP18.67■□□□□ 0.58
CLIP1-215ENST00000541108 CCDC66A2RUB6 948 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 GOLGA8SH3BPF8 625 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 PAPSS1O43252 624 aaPredicted RBP18.66■□□□□ 0.58
CLIP1-215ENST00000541108 AP1G2O75843 785 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 GABBR2O75899 941 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 BEST1O76090 585 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 RFC1P35251 1148 aaPredicted RBP18.66■□□□□ 0.58
CLIP1-215ENST00000541108 PBX3P40426 434 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 TERF1P54274 439 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms