RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 LRRC8DQ7L1W4 858 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 DDX42Q86XP3 938 aaKnown RBP eCLIP12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 HACE1Q8IYU2 909 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 FUKQ8N0W3 1084 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 RTP3Q9BQQ7 232 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 SYNCQ9H7C4 482 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 EPB41L5Q9HCM4 733 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 ARFGAP3Q9NP61 516 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 CRTAC1Q9NQ79 661 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 SLC38A7Q9NVC3 462 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 STRIP2Q9ULQ0 834 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 R3HDM2Q9Y2K5 976 aaKnown RBP12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 SQORQ9Y6N5 450 aa12.94□□□□□ -0.34
AP003559.1-201ENST00000540906 SPDYE4A6NLX3 237 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 CCDC188H7C350 402 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 PAPSS1O43252 624 aaPredicted RBP12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 PSTPIP1O43586 416 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 PSMA2P25787 234 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 FLT3P36888 993 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 ATN1P54259 1190 aaPredicted RBP12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 FAM102AQ5T9C2 384 aaPredicted RBP12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 OLFML1Q6UWY5 402 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 ZNF280BQ86YH2 543 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 RHOT1Q8IXI2 618 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 B3GALNT2Q8NCR0 500 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 AENQ8WTP8 325 aaKnown RBP12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 NDRG1Q92597 394 aaKnown RBP12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 RNF25Q96BH1 459 aaPredicted RBP12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 HEMGNQ9BXL5 484 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 NEUROG2Q9H2A3 272 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 TMEM30AQ9NV96 361 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 FAM53CQ9NYF3 392 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 OGDHLQ9ULD0 1010 aa12.93□□□□□ -0.34
AP003559.1-201ENST00000540906 FSCN2O14926 492 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 LRCH4O75427 683 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 DDHD2O94830 711 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 FAM153BP0C7A2 387 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 RALAP11233 206 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 PTPN1P18031 435 aaKnown RBP12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 ECHS1P30084 290 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 PTGIRP43119 386 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 AARSP49588 968 aaKnown RBP eCLIP12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 GATMP50440 423 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 SLC25A11Q02978 314 aaKnown RBP12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 C15orf59Q2T9L4 293 aaPredicted RBP12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 FAM153CQ494X1 144 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 GLE1Q53GS7 698 aaKnown RBP12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 MDH1BQ5I0G3 518 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 MFSD7Q6UXD7 560 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 CTU1Q7Z7A3 348 aaKnown RBP12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 SCUBE3Q8IX30 993 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 KATNAL2Q8IYT4 538 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 NIPA2Q8N8Q9 360 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 RAPGEF5Q92565 580 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 PEBP4Q96S96 227 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 FAM118BQ9BPY3 351 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 ADAM33Q9BZ11 813 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 RNF208Q9H0X6 261 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 FAM153AQ9UHL3 310 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 MYBPHLA2RUH7 354 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 C2CD4BA6NLJ0 364 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 PQBP1O60828 265 aaKnown RBP12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 SELPP16109 830 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 TFE3P19532 575 aaPredicted RBP12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 PLA2G4AP47712 749 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 KCNJ1P48048 391 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 CACNA2D1P54289 1103 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 FAM189BP81408 668 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 TAP1Q03518 808 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 STILQ15468 1287 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 DSTYKQ6XUX3 929 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 TMEM110Q86TL2 294 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 ANKRD52Q8NB46 1076 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 C1orf54Q8WWF1 131 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 RXFP2Q8WXD0 754 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 ATG4AQ8WYN0 398 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 PGBD4Q96DM1 585 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 TMEM209Q96SK2 561 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 MIS12Q9H081 205 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 CHST7Q9NS84 486 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 DDX43Q9NXZ2 648 aaKnown RBP12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 WDR35Q9P2L0 1181 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 HCSTQ9UBK5 93 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 NFU1Q9UMS0 254 aa12.92□□□□□ -0.34
AP003559.1-201ENST00000540906 MAP2K7O14733 419 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 INPPL1O15357 1258 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 PHF2O75151 1096 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 KRT1P04264 644 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 KRT10P13645 584 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 BST2Q10589 180 aaKnown RBP12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 GRIK3Q13003 919 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 KLF1Q13351 362 aaPredicted RBP12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 SMTNL2Q2TAL5 461 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 CYP4V2Q6ZWL3 525 aaPredicted RBP12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 DBF4BQ8NFT6 615 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 IPO4Q8TEX9 1081 aaKnown RBP12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 DIS3LQ8TF46 1054 aaKnown RBP12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 IFT81Q8WYA0 676 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 SCLYQ96I15 445 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms