RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 USP17L7P0C7H9 530 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 PSMC1P62191 440 aaKnown RBP15.12■□□□□ 0.01
SNHG1-213ENST00000540725 AMPD2Q01433 879 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 USP4Q13107 963 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 ZNF77Q15935 545 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 WDR49Q8IV35 697 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 TTC16Q8NEE8 873 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 MYLPFQ96A32 169 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 DHX58Q96C10 678 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 ZNF396Q96N95 335 aaPredicted RBP15.12■□□□□ 0.01
SNHG1-213ENST00000540725 CYP2S1Q96SQ9 504 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 KIAA1586Q9HCI6 787 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 SEMA4GQ9NTN9 838 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 TFIP11Q9UBB9 837 aaKnown RBP15.12■□□□□ 0.01
SNHG1-213ENST00000540725 CDH9Q9ULB4 789 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 MYH10P35580 1976 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 MAP1BP46821 2468 aaKnown RBP15.12■□□□□ 0.01
SNHG1-213ENST00000540725 ATG13O75143 517 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 EGFP01133 1207 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 WARSP23381 471 aaKnown RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 LMO2P25791 158 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 PXNP49023 591 aaPredicted RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 AMPD3Q01432 767 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 MAPRE1Q15691 268 aaKnown RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 CSRP2Q16527 193 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 FAM26FQ5R3K3 315 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 NAIF1Q69YI7 327 aaPredicted RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 EPM2AIP1Q7L775 607 aaPredicted RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 CPA6Q8N4T0 437 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 FAM160A2Q8N612 972 aaPredicted RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 FSIP1Q8NA03 581 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 ZNF507Q8TCN5 953 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 ECT2Q9H8V3 914 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 FBRSL1Q9HCM7 1045 aaKnown RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 CRTAC1Q9NQ79 661 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 DUS2Q9NX74 493 aaKnown RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 GCNT4Q9P109 453 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 MAGEC2Q9UBF1 373 aaPredicted RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 DCDC2BA2VCK2 349 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 C2orf78A6NCI8 922 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 CUTAO60888 179 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 RNF40O75150 1001 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 YEATS4O95619 227 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 PDGFRBP09619 1106 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 DRD1P21728 446 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 BDNFP23560 247 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 GJA4P35212 333 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 IFNAR2P48551 515 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 GALK1P51570 392 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 KCNB1Q14721 858 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 SNRNP35Q16560 246 aaKnown RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 CNNM4Q6P4Q7 775 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 SHC4Q6S5L8 630 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 VSTM1Q6UX27 236 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 PRR23CQ6ZRP0 262 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 TRAPPC11Q7Z392 1133 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 ARL14EPQ8N8R7 260 aaPredicted RBP15.11■□□□□ 0.01
SNHG1-213ENST00000540725 IQUBQ8NA54 791 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 RDH13Q8NBN7 331 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 NETO1Q8TDF5 533 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 OSCP1Q8WVF1 389 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 ATP2A3Q93084 1043 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 SPATA17Q96L03 361 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 MMS19Q96T76 1030 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 P2RY13Q9BPV8 354 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 BACH2Q9BYV9 841 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 AGPAT3Q9NRZ7 376 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 SLC8A2Q9UPR5 921 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 WNT6Q9Y6F9 365 aa15.11■□□□□ 0.01
SNHG1-213ENST00000540725 MYO18AQ92614 2054 aaKnown RBP15.1■□□□□ 0.01
SNHG1-213ENST00000540725 ABCA7Q8IZY2 2146 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 NUP205Q92621 2012 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 UBE4BO95155 1302 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 CCDC163A0A0D9SF12 145 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.1■□□□□ 0.01
SNHG1-213ENST00000540725 TGFB1I1O43294 461 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 DLATP10515 647 aaKnown RBP15.1■□□□□ 0.01
SNHG1-213ENST00000540725 TNNI1P19237 187 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 CYP2J2P51589 502 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 CYP27A1Q02318 531 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 EML3Q32P44 896 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 NELFCDQ8IXH7 590 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 SH3RF2Q8TEC5 729 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 GAB3Q8WWW8 586 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 EXOC4Q96A65 974 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 CEP295NLQ96MC4 621 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 FNBP1Q96RU3 617 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 CGRRF1Q99675 332 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 C7orf25Q9BPX7 421 aa15.1■□□□□ 0.01
SNHG1-213ENST00000540725 POLR3BQ9NW08 1133 aaPredicted RBP15.1■□□□□ 0.01
SNHG1-213ENST00000540725 SLC30A4O14863 429 aa15.09■□□□□ 0.01
SNHG1-213ENST00000540725 CLIC2O15247 247 aa15.09■□□□□ 0.01
SNHG1-213ENST00000540725 RPP40O75818 363 aaKnown RBP15.09■□□□□ 0.01
SNHG1-213ENST00000540725 CST3P01034 146 aaPredicted RBP15.09■□□□□ 0.01
SNHG1-213ENST00000540725 TCF3P15923 654 aa15.09■□□□□ 0.01
SNHG1-213ENST00000540725 HDCP19113 662 aa15.09■□□□□ 0.01
SNHG1-213ENST00000540725 ANXA13P27216 316 aa15.09■□□□□ 0.01
SNHG1-213ENST00000540725 GRIK1P39086 918 aa15.09■□□□□ 0.01
SNHG1-213ENST00000540725 USP46P62068 366 aa15.09■□□□□ 0.01
SNHG1-213ENST00000540725 CYP24A1Q07973 514 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms