RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 SLC7A8Q9UHI5 535 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 NENFQ9UMX5 172 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 FRMD4BQ9Y2L6 1034 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 RBMX2Q9Y388 322 aaKnown RBP9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 CTDP1Q9Y5B0 961 aaPredicted RBP9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 A0A088AWK7 358 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 TP73O15350 636 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 THAP12O43422 761 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 KDM1AO60341 852 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 TM7SF2O76062 418 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 CD48P09326 243 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 PTPRAP18433 802 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 CDH3P22223 829 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 PPARGP37231 505 aaPredicted RBP9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 LRRC63Q05C16 580 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 SPP2Q13103 211 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 PDAP1Q13442 181 aaKnown RBP9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 DGKZQ13574 1117 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 SLC1A5Q15758 541 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 ASPRV1Q53RT3 343 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 LMBRD2Q68DH5 695 aaPredicted RBP9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 CABP7Q86V35 215 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 MARVELD2Q8N4S9 558 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 LZTR1Q8N653 840 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 GMCL1P1Q8NEA9 526 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 MAML1Q92585 1016 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 MTBPQ96DY7 904 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 ANKRD36BP1Q96IX9 119 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 PLVAPQ9BX97 442 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 CEP44Q9C0F1 390 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 MAGEF1Q9HAY2 307 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 ADAMTS6Q9UKP5 1117 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 PCDHGB4Q9UN71 923 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 SSX2IPQ9Y2D8 614 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 PCDHGB5Q9Y5G0 923 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 MAD1L1Q9Y6D9 718 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 ZHX2Q9Y6X8 837 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 WDR90Q96KV7 1748 aa9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 GREB1LQ9C091 1923 aaPredicted RBP9.91□□□□□ -0.82
CTNNA1-243ENST00000540387 H3BRJ5 948 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 PRPF4O43172 522 aaKnown RBP eCLIP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 TIMM44O43615 452 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 ZBED4O75132 1171 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 CNOT3O75175 753 aaKnown RBP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 TPPPO94811 219 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 PABPC1P11940 636 aaKnown RBP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 CHRNB2P17787 502 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 CTNNA2P26232 953 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 PMLP29590 882 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 RPA3P35244 121 aaPredicted RBP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 HOXD13P35453 343 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 PRKCIP41743 596 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 PDE1CQ14123 709 aaPredicted RBP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 CLUL1Q15846 466 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 DCAF6Q58WW2 860 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 AAGABQ6PD74 315 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 TTC7BQ86TV6 843 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 BPHLQ86WA6 291 aaPredicted RBP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 TMPRSS6Q8IU80 811 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 CCDC105Q8IYK2 499 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 PYDC1Q8WXC3 89 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 BTBD9Q96Q07 612 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 THTPAQ9BU02 230 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 MKNK1Q9BUB5 465 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 ZNF408Q9H9D4 720 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 RSL24D1Q9UHA3 163 aaKnown RBP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 SCN4AP35499 1836 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 MYOCOSA0A1B0GUC4 107 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 K7EPI3 171 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 ITM2AO43736 263 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 SCG2P13521 617 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 ZNF12P17014 697 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 GNA11P29992 359 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 KPNA1P52294 538 aaPredicted RBP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 NCKAP1LP55160 1127 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 ZBTB17Q13105 803 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 VGLL4Q14135 290 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 SEPT6Q14141 434 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 MAPK6Q16659 721 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 GPATCH4Q5T3I0 446 aaKnown RBP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 TRABD2AQ86V40 505 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 IFNLR1Q8IU57 520 aaPredicted RBP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 CENPSQ8N2Z9 138 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 ALLCQ8N6M5 410 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 RBM15BQ8NDT2 890 aaKnown RBP9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 DDI1Q8WTU0 396 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 CEP295NLQ96MC4 621 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 TTC25Q96NG3 672 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 GCNAQ96QF7 691 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 PIGSQ96S52 555 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 RIOX1Q9H6W3 641 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 PARVBQ9HBI1 364 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 GINM1Q9NU53 330 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 NINJ2Q9NZG7 142 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 PLA2G4CQ9UP65 541 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 COL4A3BPQ9Y5P4 624 aa9.9□□□□□ -0.82
CTNNA1-243ENST00000540387 SOBPA7XYQ1 873 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 STAMBPO95630 424 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 VDRP11473 427 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms