RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 MCL1Q07820 350 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 SCRN1Q12765 414 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 ECM1Q16610 540 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 PLEKHG6Q3KR16 790 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 EMC10Q5UCC4 262 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 SPATA1Q5VX52 437 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 HAUS3Q68CZ6 603 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 RGL4Q8IZJ4 473 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 ADGRG2Q8IZP9 1017 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 FSIP1Q8NA03 581 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 LRRC15Q8TF66 581 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 SETD7Q8WTS6 366 aaKnown RBP12.99□□□□□ -0.33
YBX3-207ENST00000539204 SLC22A12Q96S37 553 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 TENM4Q6N022 2769 aa12.99□□□□□ -0.33
YBX3-207ENST00000539204 PTPRDP23468 1912 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 TNRC6BQ9UPQ9 1833 aaKnown RBP12.98□□□□□ -0.33
YBX3-207ENST00000539204 PIRO00625 290 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 CYB561D2O14569 222 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 ZBTB24O43167 697 aaPredicted RBP12.98□□□□□ -0.33
YBX3-207ENST00000539204 CBFA2T3O75081 653 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 KAT7O95251 611 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 APODP05090 189 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 GNSP15586 552 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 HDCP19113 662 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 TNFRSF4P43489 277 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 SLC6A11P48066 632 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 SMTNP53814 917 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 USP4Q13107 963 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 KYAT1Q16773 422 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 C9orf57Q5W0N0 161 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 ZPBP2Q6X784 338 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 DAW1Q8N136 415 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 GALNT15Q8N3T1 639 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 PDCD7Q8N8D1 485 aaKnown RBP12.98□□□□□ -0.33
YBX3-207ENST00000539204 ARL14EPQ8N8R7 260 aaPredicted RBP12.98□□□□□ -0.33
YBX3-207ENST00000539204 TRIML1Q8N9V2 468 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 PIP4K2CQ8TBX8 421 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 SPATA18Q8TC71 538 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 DCBLD2Q96PD2 775 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 PI4K2AQ9BTU6 479 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 ORC3Q9UBD5 711 aaPredicted RBP12.98□□□□□ -0.33
YBX3-207ENST00000539204 SUSD2Q9UGT4 822 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 PCOLCE2Q9UKZ9 415 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 ZNF462Q96JM2 2506 aa12.98□□□□□ -0.33
YBX3-207ENST00000539204 MYO16Q9Y6X6 1858 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 SFI1A8K8P3 1242 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 J3QKU1 62 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 CAPN9O14815 690 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 DTNBO60941 627 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 ADAM23O75077 832 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 TCF3P15923 654 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 TNFSF9P41273 254 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 GRIA2P42262 883 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 KIR2DL1P43626 348 aaPredicted RBP12.97□□□□□ -0.33
YBX3-207ENST00000539204 GPR15P49685 360 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 RPL10AP62906 217 aaKnown RBP12.97□□□□□ -0.33
YBX3-207ENST00000539204 KCNB1Q14721 858 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 NFE2Q16621 373 aaPredicted RBP12.97□□□□□ -0.33
YBX3-207ENST00000539204 DDR2Q16832 855 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 ZC2HC1CQ53FD0 456 aaPredicted RBP12.97□□□□□ -0.33
YBX3-207ENST00000539204 SYCP2LQ5T4T6 812 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 SDHAF4Q5VUM1 108 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 SLC41A1Q8IVJ1 513 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 ZNF843Q8N446 348 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 STKLD1Q8NE28 680 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 FAM212AQ96EL1 285 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 TRMT2BQ96GJ1 504 aaKnown RBP12.97□□□□□ -0.33
YBX3-207ENST00000539204 MYRFLQ96LU7 910 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 ZDHHC5Q9C0B5 715 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 RPF1Q9H9Y2 349 aaKnown RBP12.97□□□□□ -0.33
YBX3-207ENST00000539204 ZDHHC4Q9NPG8 344 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 DDX19AQ9NUU7 478 aaKnown RBP12.97□□□□□ -0.33
YBX3-207ENST00000539204 GCNT4Q9P109 453 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 DNM3Q9UQ16 869 aa12.97□□□□□ -0.33
YBX3-207ENST00000539204 GOLGA4Q13439 2230 aaKnown RBP12.96□□□□□ -0.33
YBX3-207ENST00000539204 DENND4CQ5VZ89 1909 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 ZNF217O75362 1048 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 TADA3O75528 432 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 NOL4O94818 638 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 EIF2DP41214 584 aaKnown RBP12.96□□□□□ -0.33
YBX3-207ENST00000539204 PDE6CP51160 858 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 TSPY1Q01534 308 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 GAB4Q2WGN9 574 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 WSCD1Q658N2 575 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 MARCH9Q86YJ5 346 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 SFTPA1Q8IWL2 248 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 CD302Q8IX05 232 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 SPIRE2Q8WWL2 714 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 ZNF419Q96HQ0 510 aaPredicted RBP12.96□□□□□ -0.33
YBX3-207ENST00000539204 HSPA12BQ96MM6 686 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 PYM1Q9BRP8 204 aaKnown RBP12.96□□□□□ -0.33
YBX3-207ENST00000539204 HAPLN2Q9GZV7 340 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 ARHGEF4Q9NR80 690 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 ARHGAP26Q9UNA1 814 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 KIAA1549LQ6ZVL6 1849 aa12.96□□□□□ -0.33
YBX3-207ENST00000539204 PCDH15Q96QU1 1955 aa12.96□□□□□ -0.34
YBX3-207ENST00000539204 IGHV1OR15-9A0A0B4J2B8 117 aa12.95□□□□□ -0.34
YBX3-207ENST00000539204 ANO9A1A5B4 782 aa12.95□□□□□ -0.34
YBX3-207ENST00000539204 C2orf78A6NCI8 922 aa12.95□□□□□ -0.34
YBX3-207ENST00000539204 TBC1D3BA6NDS4 549 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms