RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 MROH9Q5TGP6 573 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 SFMBT2Q5VUG0 894 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 NAIF1Q69YI7 327 aaPredicted RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 TTI2Q6NXR4 508 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 SLC30A9Q6PML9 568 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 ZNF804AQ7Z570 1209 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 APBB1IPQ7Z5R6 666 aaPredicted RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 LRRTM3Q86VH5 581 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 RTKN2Q8IZC4 609 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 ABI1Q8IZP0 508 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 USP38Q8NB14 1042 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 NLGN2Q8NFZ4 835 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 ACTRT1Q8TDG2 376 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 ZNF483Q8TF39 744 aaPredicted RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 HDAC7Q8WUI4 952 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 NSMCE1Q8WV22 266 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 FBXW5Q969U6 566 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 ASIC4Q96FT7 647 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 KIRREL1Q96J84 757 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 XPO6Q96QU8 1125 aaKnown RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 STRBPQ96SI9 672 aaKnown RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 EYA3Q99504 573 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 KCNJ15Q99712 375 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 RTFDC1Q9BY42 306 aaPredicted RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 CCSER1Q9C0I3 900 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 VPS33BQ9H267 617 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 BLZF1Q9H2G9 400 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 EPB41L1Q9H4G0 881 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 TRIM39Q9HCM9 518 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 RIC8AQ9NPQ8 531 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 VPS54Q9P1Q0 977 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 ADAMTS6Q9UKP5 1117 aa7.05□□□□□ -1.28
USP28-202ENST00000535607 TNPO3Q9Y5L0 923 aaKnown RBP7.05□□□□□ -1.28
USP28-202ENST00000535607 FER1L6Q2WGJ9 1857 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 ZNF532Q9HCE3 1301 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 GOLGB1Q14789 3259 aaKnown RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 RASSF10A6NK89 507 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 O00370 1275 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 MPHOSPH10O00566 681 aaKnown RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 FOXP2O15409 715 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 CTNND1O60716 968 aaKnown RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 HIP1RO75146 1068 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 UFL1O94874 794 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 AGTP01019 485 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 CHGBP05060 677 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 GLI1P08151 1106 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 VIMP08670 466 aaKnown RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 CLTAP09496 248 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 JMJD7P0C870 316 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 DPEP1P16444 411 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 DRD4P21917 467 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 CHRNA5P30532 468 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 SKIV2L2P42285 1042 aaKnown RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 GNAQP50148 359 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 CCNG1P51959 295 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 TMEM62Q0P6H9 643 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 MYO1EQ12965 1108 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 CRY1Q16526 586 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 TDRD12Q587J7 1177 aaKnown RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 CMPK2Q5EBM0 449 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 RRP12Q5JTH9 1297 aaKnown RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 ERMARDQ5T6L9 678 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 IFIT1BQ5T764 474 aaKnown RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 KLHDC7AQ5VTJ3 777 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 MBLAC2Q68D91 279 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 DPP8Q6V1X1 898 aaPredicted RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 USP49Q70CQ1 688 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 TRPM8Q7Z2W7 1104 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 FGD2Q7Z6J4 655 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 SDCCAG8Q86SQ7 713 aaPredicted RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 PNMA8AQ86V59 439 aaPredicted RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 WFDC3Q8IUB2 231 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 SMCR8Q8TEV9 937 aaPredicted RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 CASKIN2Q8WXE0 1202 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 RAPGEF5Q92565 580 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 GRAMD1AQ96CP6 724 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 PGM2Q96G03 612 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 CALML4Q96GE6 196 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 WNK4Q96J92 1243 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 RUNDC3BQ96NL0 473 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 TSC22D3Q99576 134 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 AP5M1Q9H0R1 490 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 NDST4Q9H3R1 872 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 CCDC134Q9H6E4 229 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 CAAP1Q9H8G2 361 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 MMRN2Q9H8L6 949 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 CEP72Q9P209 647 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 MTRF1LQ9UGC7 380 aaKnown RBP7.04□□□□□ -1.28
USP28-202ENST00000535607 SLC12A6Q9UHW9 1150 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 ACSL6Q9UKU0 697 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 SLC12A4Q9UP95 1085 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 PSME4Q14997 1843 aa7.04□□□□□ -1.28
USP28-202ENST00000535607 AKAP11Q9UKA4 1901 aa7.03□□□□□ -1.28
USP28-202ENST00000535607 hCG_2014768A0A024R1R8 64 aa7.03□□□□□ -1.28
USP28-202ENST00000535607 A0A087X0B3 334 aa7.03□□□□□ -1.28
USP28-202ENST00000535607 CCDC194A0A1B0GVG4 234 aa7.03□□□□□ -1.28
USP28-202ENST00000535607 PVALEFA0A1B0GWK0 134 aa7.03□□□□□ -1.28
USP28-202ENST00000535607 TCRBV16S1A1N1A0A5B0 115 aa7.03□□□□□ -1.28
USP28-202ENST00000535607 DNM1LO00429 736 aa7.03□□□□□ -1.28
USP28-202ENST00000535607 PSPNO60542 156 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms