RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TNFRSF10BO14763 440 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 TADA3O75528 432 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 CCDC192P0DO97 292 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 CDC25CP30307 473 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 ORC1Q13415 861 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 WDR44Q5JSH3 913 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 TMEM31Q5JXX7 168 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 FAM35AQ86V20 835 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 SCN4BQ8IWT1 228 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 TTC39CQ8N584 583 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 CCDC150Q8NCX0 1101 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 FAM200AQ8TCP9 573 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 ELSPBP1Q96BH3 223 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 CNOT6LQ96LI5 555 aaKnown RBP13.8□□□□□ -0.2
VPS28-216ENST00000533806 HNRNPABQ99729 332 aaKnown RBP13.8□□□□□ -0.2
VPS28-216ENST00000533806 LRFN3Q9BTN0 628 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 PLA2G2FQ9BZM2 168 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 THAP9Q9H5L6 903 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 SLC2A4RGQ9NR83 387 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 IL37Q9NZH6 218 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.8□□□□□ -0.2
VPS28-216ENST00000533806 NCANO14594 1321 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 MYO10Q9HD67 2058 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 TMEM221A6NGB7 291 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 M0R296 226 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 TRIM66O15016 1216 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 BEST1O76090 585 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 AFPP02771 609 aaKnown RBP13.79□□□□□ -0.2
VPS28-216ENST00000533806 SRFP11831 508 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 CD58P19256 250 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 GRIK1P39086 918 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 RAD23BP54727 409 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 USP46P62068 366 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 CUL2Q13617 745 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 SLC4A11Q8NBS3 891 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 EHBP1Q8NDI1 1231 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 ZMIZ2Q8NF64 920 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 ZSCAN18Q8TBC5 510 aaPredicted RBP13.79□□□□□ -0.2
VPS28-216ENST00000533806 SLC2A14Q8TDB8 520 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 RSPRY1Q96DX4 576 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 KCNK16Q96T55 309 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 SMOQ99835 787 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 KXD1Q9BQD3 176 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 NT5C1AQ9BXI3 368 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 SLC46A2Q9BY10 475 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 ATXN3LQ9H3M9 355 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 TASP1Q9H6P5 420 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 TMEM63CQ9P1W3 806 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 DACH1Q9UI36 760 aa13.79□□□□□ -0.2
VPS28-216ENST00000533806 FAM92AA1XBS5 289 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 CCDC130P13994 396 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 ACO1P21399 889 aaKnown RBP13.78□□□□□ -0.2
VPS28-216ENST00000533806 VIPR2P41587 438 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 GPC5P78333 572 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 CYP4F8P98187 520 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 CCDC183Q5T5S1 534 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 DENND5BQ6ZUT9 1274 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 HFE2Q6ZVN8 426 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 ENOX1Q8TC92 643 aaKnown RBP13.78□□□□□ -0.2
VPS28-216ENST00000533806 TMEM176AQ96HP8 235 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 LRRC3BQ96PB8 259 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 ZFP14Q9HCL3 533 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 UXTQ9UBK9 157 aaPredicted RBP13.78□□□□□ -0.2
VPS28-216ENST00000533806 WNT16Q9UBV4 365 aa13.78□□□□□ -0.2
VPS28-216ENST00000533806 HHLA1C9JL84 531 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 CLSTN1O94985 981 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 PTPRDP23468 1912 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 TBXAS1P24557 533 aaPredicted RBP13.77□□□□□ -0.21
VPS28-216ENST00000533806 DDX6P26196 483 aaKnown RBP eCLIP13.77□□□□□ -0.21
VPS28-216ENST00000533806 GCNT1Q02742 428 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 LRMPQ12912 555 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 TAF12Q16514 161 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 ARHGAP15Q53QZ3 475 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 MIIPQ5JXC2 388 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 GPR158Q5T848 1215 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 PHLDB3Q6NSJ2 640 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 VITQ6UXI7 678 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 MON1AQ86VX9 555 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 ARID3BQ8IVW6 561 aaPredicted RBP13.77□□□□□ -0.21
VPS28-216ENST00000533806 KAT5Q92993 513 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 CYFIP2Q96F07 1278 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 SMARCD1Q96GM5 515 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 DMAP1Q9NPF5 467 aaPredicted RBP13.77□□□□□ -0.21
VPS28-216ENST00000533806 SAMSN1Q9NSI8 373 aaKnown RBP13.77□□□□□ -0.21
VPS28-216ENST00000533806 FAM49BQ9NUQ9 324 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 ZMYM5Q9UJ78 669 aa13.77□□□□□ -0.21
VPS28-216ENST00000533806 MAGED2Q9UNF1 606 aaPredicted RBP13.77□□□□□ -0.21
VPS28-216ENST00000533806 ATP8B3O60423 1300 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 GTPBP10A4D1E9 387 aaKnown RBP13.76□□□□□ -0.21
VPS28-216ENST00000533806 KRBA1A5PL33 1030 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 AP1G2O75843 785 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 PRAMEF12O95522 483 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 PDGFBP01127 241 aaPredicted RBP13.76□□□□□ -0.21
VPS28-216ENST00000533806 NPR3P17342 541 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 ANXA13P27216 316 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 FCHO2Q0JRZ9 810 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 CETN1Q12798 172 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 ZNF394Q53GI3 561 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 PPP1R26Q5T8A7 1209 aaPredicted RBP13.76□□□□□ -0.21
VPS28-216ENST00000533806 IER5LQ5T953 404 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms