RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 DNAI2Q9GZS0 605 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 UXTQ9UBK9 157 aaPredicted RBP15.99■□□□□ 0.15
CPSF1-208ENST00000532560 ZMYM5Q9UJ78 669 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 F8VP50 259 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 CLDN5O00501 218 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 TECTAO75443 2155 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 ECI2O75521 394 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 CCDC130P13994 396 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 FCARP24071 287 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 TBXAS1P24557 533 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-208ENST00000532560 YWHAEP62258 255 aaKnown RBP15.98■□□□□ 0.15
CPSF1-208ENST00000532560 CUL2Q13617 745 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 ARHGAP15Q53QZ3 475 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 FAM78AQ5JUQ0 283 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 TRIM67Q6ZTA4 783 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 PAQR9Q6ZVX9 377 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 FAM114A1Q8IWE2 563 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 FUKQ8N0W3 1084 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 SLC44A3Q8N4M1 653 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 STKLD1Q8NE28 680 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 LMO3Q8TAP4 145 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 ZSWIM3Q96MP5 696 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 NT5C1BQ96P26 610 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 ATXN3LQ9H3M9 355 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 SMOC2Q9H3U7 446 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 SLITRK6Q9H5Y7 841 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 TRPV4Q9HBA0 871 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 KRT82Q9NSB4 513 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 CISHQ9NSE2 258 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 TMEM30AQ9NV96 361 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 TMEM63CQ9P1W3 806 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 MAGED2Q9UNF1 606 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-208ENST00000532560 GREB1Q4ZG55 1949 aa15.98■□□□□ 0.15
CPSF1-208ENST00000532560 OBSL1O75147 1896 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 TADA3O75528 432 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 F11P03951 625 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 SRFP11831 508 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 MRE11P49959 708 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 CACNA2D1P54289 1103 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 CYP4F8P98187 520 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 STX1AQ16623 288 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 TMEM31Q5JXX7 168 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 STXBP5Q5T5C0 1151 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 SASS6Q6UVJ0 657 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 DENND5BQ6ZUT9 1274 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 TMEM150AQ86TG1 271 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 UBR7Q8N806 425 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 ZSCAN18Q8TBC5 510 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-208ENST00000532560 SLC2A14Q8TDB8 520 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 SMARCD2Q92925 531 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 ELSPBP1Q96BH3 223 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 HNRNPABQ99729 332 aaKnown RBP15.97■□□□□ 0.15
CPSF1-208ENST00000532560 KXD1Q9BQD3 176 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 MED10Q9BTT4 135 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 TTLL2Q9BWV7 592 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 DMAP1Q9NPF5 467 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-208ENST00000532560 FAM49BQ9NUQ9 324 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 ANO10Q9NW15 660 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 EHD2Q9NZN4 543 aa15.97■□□□□ 0.15
CPSF1-208ENST00000532560 NUP210Q8TEM1 1887 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-208ENST00000532560 DENND4CQ5VZ89 1909 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 FAM86C2PA6NEL3 165 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 TMEM221A6NGB7 291 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 SOBPA7XYQ1 873 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 PRR33A8MZF0 331 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 M0R296 226 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 DDX6P26196 483 aaKnown RBP eCLIP15.96■□□□□ 0.15
CPSF1-208ENST00000532560 WEE1P30291 646 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 GCNT1Q02742 428 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 GPR158Q5T848 1215 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 C12orf29Q8N999 325 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 ST13P5Q8NFI4 369 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-208ENST00000532560 ENOX1Q8TC92 643 aaKnown RBP15.96■□□□□ 0.15
CPSF1-208ENST00000532560 ASIC4Q96FT7 647 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 RPP25Q9BUL9 199 aaKnown RBP15.96■□□□□ 0.15
CPSF1-208ENST00000532560 TASP1Q9H6P5 420 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 ZFP14Q9HCL3 533 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 CSNK1G1Q9HCP0 422 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 SLC2A4RGQ9NR83 387 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 GCNT4Q9P109 453 aa15.96■□□□□ 0.15
CPSF1-208ENST00000532560 NARSO43776 548 aaKnown RBP15.95■□□□□ 0.14
CPSF1-208ENST00000532560 AP1G2O75843 785 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 FAM200BP0CF97 657 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 MTIF2P46199 727 aaKnown RBP15.95■□□□□ 0.14
CPSF1-208ENST00000532560 RAD23BP54727 409 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 USP46P62068 366 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 LRMPQ12912 555 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 MAN2A1Q16706 1144 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 TANGO2Q6ICL3 276 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 C11orf57Q6ZUT1 292 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-208ENST00000532560 CREBRFQ8IUR6 639 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 PPM1KQ8N3J5 372 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 SLC4A11Q8NBS3 891 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 EHBP1Q8NDI1 1231 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 MRPS31Q92665 395 aaKnown RBP15.95■□□□□ 0.14
CPSF1-208ENST00000532560 E2F7Q96AV8 911 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 TMEM176AQ96HP8 235 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 INTS2Q9H0H0 1204 aaKnown RBP15.95■□□□□ 0.14
CPSF1-208ENST00000532560 NFE2L3Q9Y4A8 694 aa15.95■□□□□ 0.14
CPSF1-208ENST00000532560 PATJQ8NI35 1801 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms