RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 PKN3Q6P5Z2 889 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 FAM171BQ6P995 826 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 UNC13DQ70J99 1090 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 EPM2AIP1Q7L775 607 aaPredicted RBP13.9□□□□□ -0.18
CPSF1-204ENST00000529288 GRAMD1CQ8IYS0 662 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 CPA6Q8N4T0 437 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 XXYLT1Q8NBI6 393 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 SPATA18Q8TC71 538 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 SCFD1Q8WVM8 642 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 FUBP3Q96I24 572 aaKnown RBP eCLIP13.9□□□□□ -0.18
CPSF1-204ENST00000529288 SLC22A12Q96S37 553 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 MRPL45Q9BRJ2 306 aaKnown RBP13.9□□□□□ -0.18
CPSF1-204ENST00000529288 PARD6AQ9NPB6 346 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 CRTAC1Q9NQ79 661 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 NXF1Q9UBU9 619 aaKnown RBP13.9□□□□□ -0.18
CPSF1-204ENST00000529288 CDV3Q9UKY7 258 aaKnown RBP13.9□□□□□ -0.18
CPSF1-204ENST00000529288 SLC8A2Q9UPR5 921 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 WNT6Q9Y6F9 365 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 WDR87Q6ZQQ6 2873 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 TSC2P49815 1807 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 PATJQ8NI35 1801 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 FRYLO94915 3013 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 EXOC3O60645 756 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 F13A1P00488 732 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 EGFP01133 1207 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 HDCP19113 662 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 WARSP23381 471 aaKnown RBP13.89□□□□□ -0.19
CPSF1-204ENST00000529288 MAGEA11P43364 429 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 GALK1P51570 392 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 FAM160A1Q05DH4 1040 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 CYP24A1Q07973 514 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 CUL4BQ13620 913 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 PSMD6Q15008 389 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 MAPRE1Q15691 268 aaKnown RBP13.89□□□□□ -0.19
CPSF1-204ENST00000529288 CFAP221Q4G0U5 840 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 CEP57L1Q8IYX8 460 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 SYNPOQ8N3V7 929 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 SH3RF2Q8TEC5 729 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 SNX21Q969T3 373 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 CHFRQ96EP1 664 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 TRMT2BQ96GJ1 504 aaKnown RBP13.89□□□□□ -0.19
CPSF1-204ENST00000529288 MYRFLQ96LU7 910 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 CGRRF1Q99675 332 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 POLR3BQ9NW08 1133 aaPredicted RBP13.89□□□□□ -0.19
CPSF1-204ENST00000529288 PCDHA7Q9UN72 937 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 ANK1P16157 1881 aa13.89□□□□□ -0.19
CPSF1-204ENST00000529288 COL4A2P08572 1712 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 SOBPA7XYQ1 873 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 A8MXQ7 604 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 PRR5-ARHGAP8B1AHC4 643 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 ATG13O75143 517 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 RNF40O75150 1001 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 RETP07949 1114 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 CNR2P34972 360 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 ATXN1P54253 815 aaKnown RBP13.88□□□□□ -0.19
CPSF1-204ENST00000529288 MYL6P60660 151 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 ARHGAP8P85298 464 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 BIRC3Q13489 604 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 ZNF268Q14587 947 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-204ENST00000529288 WDR72Q3MJ13 1102 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 TMEM196Q5HYL7 178 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 NAIF1Q69YI7 327 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-204ENST00000529288 VSTM1Q6UX27 236 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 DENND5BQ6ZUT9 1274 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 OSCP1Q8WVF1 389 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 EXOC4Q96A65 974 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 PCED1BQ96HM7 432 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 P2RY13Q9BPV8 354 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 ECT2Q9H8V3 914 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 MAGEF1Q9HAY2 307 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 FBRSL1Q9HCM7 1045 aaKnown RBP13.88□□□□□ -0.19
CPSF1-204ENST00000529288 DLL3Q9NYJ7 618 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 TRPM5Q9NZQ8 1165 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 SERTAD1Q9UHV2 236 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.88□□□□□ -0.19
CPSF1-204ENST00000529288 UBE4BO95155 1302 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 EP300Q09472 2414 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-204ENST00000529288 GVINP1Q7Z2Y8 2422 aa13.88□□□□□ -0.19
CPSF1-204ENST00000529288 DCDC2BA2VCK2 349 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 F8VP50 259 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 TRDMT1O14717 391 aaKnown RBP13.87□□□□□ -0.19
CPSF1-204ENST00000529288 TRIM66O15016 1216 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 AXIN1O15169 862 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 CCDC192P0DO97 292 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 PTPN1P18031 435 aaKnown RBP13.87□□□□□ -0.19
CPSF1-204ENST00000529288 SDHBP21912 280 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 GJA4P35212 333 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 CASP4P49662 377 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 USP46P62068 366 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 DNM1Q05193 864 aaKnown RBP13.87□□□□□ -0.19
CPSF1-204ENST00000529288 NR1H3Q13133 447 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 ZNF77Q15935 545 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 KNOP1Q1ED39 458 aaKnown RBP13.87□□□□□ -0.19
CPSF1-204ENST00000529288 RESP18Q5W5W9 173 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 CNNM4Q6P4Q7 775 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 WDR5BQ86VZ2 330 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 MYCBPAPQ8TBZ2 947 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 ZNF516Q92618 1163 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 ELMO3Q96BJ8 720 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 SPATA17Q96L03 361 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms