RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 RNF25Q96BH1 459 aaPredicted RBP21.81■■□□□ 1.08
VPS28-209ENST00000528142 RBM41Q96IZ5 413 aaKnown RBP21.81■■□□□ 1.08
VPS28-209ENST00000528142 SLITRK1Q96PX8 696 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 HEMGNQ9BXL5 484 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 TSPYL2Q9H2G4 693 aaPredicted RBP21.81■■□□□ 1.08
VPS28-209ENST00000528142 SNX25Q9H3E2 840 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 CHST7Q9NS84 486 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 MOXD2PA6NHM9 499 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 HUS1O60921 280 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 LRCH4O75427 683 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 GABBR2O75899 941 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 IGFBP6P24592 240 aaPredicted RBP21.8■■□□□ 1.08
VPS28-209ENST00000528142 KCNJ1P48048 391 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 SLC25A11Q02978 314 aaKnown RBP21.8■■□□□ 1.08
VPS28-209ENST00000528142 FAM102AQ5T9C2 384 aaPredicted RBP21.8■■□□□ 1.08
VPS28-209ENST00000528142 FAM183BPQ6ZVS7 135 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 CCDC105Q8IYK2 499 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 ADGRF2Q8IZF7 708 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 SLAIN1Q8ND83 568 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 ZBTB9Q96C00 473 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 TRIM31Q9BZY9 425 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 DCLK3Q9C098 648 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 KLHL11Q9NVR0 708 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 DDX56Q9NY93 547 aaKnown RBP21.8■■□□□ 1.08
VPS28-209ENST00000528142 HESX1Q9UBX0 185 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 R3HDM2Q9Y2K5 976 aaKnown RBP21.8■■□□□ 1.08
VPS28-209ENST00000528142 ARL5CA6NH57 179 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 SYF2O95926 243 aaKnown RBP21.8■■□□□ 1.08
VPS28-209ENST00000528142 KRT1P04264 644 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 THP07101 528 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 HSPA9P38646 679 aaKnown RBP21.8■■□□□ 1.08
VPS28-209ENST00000528142 RGS7P49802 495 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 PDE4CQ08493 712 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 ACAP1Q15027 740 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 OSTM1Q86WC4 334 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 TSEN34Q9BSV6 310 aaKnown RBP21.8■■□□□ 1.08
VPS28-209ENST00000528142 BEGAINQ9BUH8 593 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 MED4Q9NPJ6 270 aa21.8■■□□□ 1.08
VPS28-209ENST00000528142 PI4K2BG5E9Z4 385 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 PTPN7P35236 360 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 RAB27AP51159 221 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 PRMT2P55345 433 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 COPS2P61201 443 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 ALS2CLQ60I27 953 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 OR6B2Q6IFH4 312 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 TRNP1Q6NT89 227 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 MFSD7Q6UXD7 560 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 ANKRD52Q8NB46 1076 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 ATG4AQ8WYN0 398 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 RAPGEF5Q92565 580 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 PIWIL1Q96J94 861 aaKnown RBP21.79■■□□□ 1.08
VPS28-209ENST00000528142 ZDHHC18Q9NUE0 388 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 NOD1Q9Y239 953 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 SQORQ9Y6N5 450 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 FRMPD3Q5JV73 1810 aa21.79■■□□□ 1.08
VPS28-209ENST00000528142 A0A0U1RQF3 1178 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 GOLGA6BA6NDN3 693 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 C2CD4BA6NLJ0 364 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 PIK3R2O00459 728 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 CYB561D2O14569 222 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 CCDC130P13994 396 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 IL1R2P27930 398 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 GGCXP38435 758 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 CETN2P41208 172 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 ZNF143P52747 638 aaPredicted RBP21.78■■□□□ 1.08
VPS28-209ENST00000528142 OLFML1Q6UWY5 402 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 SPOCD1Q6ZMY3 1216 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 IQCKQ8N0W5 287 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 GLT1D1Q96MS3 346 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 HOMER3Q9NSC5 361 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 GRHL1Q9NZI5 618 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 CACNG4Q9UBN1 327 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 PTPN22Q9Y2R2 807 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 SNX24Q9Y343 169 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.78■■□□□ 1.08
VPS28-209ENST00000528142 C3orf70A6NLC5 250 aaPredicted RBP21.78■■□□□ 1.08
VPS28-209ENST00000528142 GABRDO14764 452 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 CAND2O75155 1236 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 ECEL1O95672 775 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 FLT3P36888 993 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 RPL34P49207 117 aaKnown RBP21.78■■□□□ 1.08
VPS28-209ENST00000528142 ADCY2Q08462 1091 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 ARHGEF6Q15052 776 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 CCNG2Q16589 344 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 SLC43A3Q8NBI5 491 aa21.78■■□□□ 1.08
VPS28-209ENST00000528142 KHSRPQ92945 711 aaKnown RBP eCLIP21.78■■□□□ 1.08
VPS28-209ENST00000528142 KRT7P08729 469 aa21.77■■□□□ 1.08
VPS28-209ENST00000528142 SCNN1GP51170 649 aa21.77■■□□□ 1.08
VPS28-209ENST00000528142 BST2Q10589 180 aaKnown RBP21.77■■□□□ 1.08
VPS28-209ENST00000528142 SNX1Q13596 522 aa21.77■■□□□ 1.08
VPS28-209ENST00000528142 HADHQ16836 314 aaKnown RBP21.77■■□□□ 1.08
VPS28-209ENST00000528142 WSCD1Q658N2 575 aa21.77■■□□□ 1.08
VPS28-209ENST00000528142 ZDHHC24Q6UX98 284 aa21.77■■□□□ 1.08
VPS28-209ENST00000528142 FAM71BQ8TC56 605 aa21.77■■□□□ 1.08
VPS28-209ENST00000528142 PIK3R5Q8WYR1 880 aa21.77■■□□□ 1.08
VPS28-209ENST00000528142 TNIP3Q96KP6 325 aa21.77■■□□□ 1.08
VPS28-209ENST00000528142 DNAI2Q9GZS0 605 aa21.77■■□□□ 1.08
VPS28-209ENST00000528142 POLR3GO15318 223 aaPredicted RBP21.76■■□□□ 1.07
VPS28-209ENST00000528142 PAPSS1O43252 624 aaPredicted RBP21.76■■□□□ 1.07
VPS28-209ENST00000528142 KRT10P13645 584 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms