RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 NRBP1Q9UHY1 535 aa4.54□□□□□ -1.68
CD44-226ENST00000527889 TMEFF2Q9UIK5 374 aaPredicted RBP4.54□□□□□ -1.68
CD44-226ENST00000527889 PNMA8BQ9ULN7 279 aaPredicted RBP4.54□□□□□ -1.68
CD44-226ENST00000527889 RNF112Q9ULX5 631 aa4.54□□□□□ -1.68
CD44-226ENST00000527889 ZKSCAN5Q9Y2L8 839 aa4.54□□□□□ -1.68
CD44-226ENST00000527889 COQ6Q9Y2Z9 468 aa4.54□□□□□ -1.68
CD44-226ENST00000527889 ST14Q9Y5Y6 855 aa4.54□□□□□ -1.68
CD44-226ENST00000527889 ALPK3Q96L96 1907 aa4.54□□□□□ -1.68
CD44-226ENST00000527889 MUC6Q6W4X9 2439 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 PTPRDP23468 1912 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 GSTTP1A0A1W2PQM5 241 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 FRMD3A2A2Y4 597 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CFAP69A5D8W1 941 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 ASB14A6NK59 587 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 IFRD1O00458 451 aaPredicted RBP4.53□□□□□ -1.68
CD44-226ENST00000527889 PSMA7O14818 248 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 AURKAO14965 403 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 HIP1RO75146 1068 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 TBCAO75347 108 aaKnown RBP4.53□□□□□ -1.68
CD44-226ENST00000527889 FARP2O94887 1054 aaPredicted RBP4.53□□□□□ -1.68
CD44-226ENST00000527889 PRPF6O94906 941 aaKnown RBP4.53□□□□□ -1.68
CD44-226ENST00000527889 SNUPNO95149 360 aaKnown RBP4.53□□□□□ -1.68
CD44-226ENST00000527889 PRAMEF1O95521 474 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 GGPS1O95749 300 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 SERPINC1P01008 464 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 SUPT20HL2P0C7V6 817 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 MYBP10242 640 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 PF4V1P10720 104 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 ZNF18P17022 549 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CD53P19397 219 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 MUTP22033 750 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CCNE1P24864 410 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 SFNP31947 248 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 ICAM3P32942 547 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 GRIK1P39086 918 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CTSKP43235 329 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 RARRES1P49788 294 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CASP5P51878 434 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 NPEPPSP55786 919 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 UBASH3AP57075 661 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 PSMC5P62195 406 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 POU4F1Q01851 419 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 PRKCEQ02156 737 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 GOLGA8FQ08AF8 430 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 GOLGA8DPQ0D2H9 430 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 FAPQ12884 760 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 MAPK7Q13164 816 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CRHR2Q13324 411 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 KRT31Q15323 416 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 PCBP2Q15366 365 aaKnown RBP eCLIP4.53□□□□□ -1.68
CD44-226ENST00000527889 FAM110CQ1W6H9 321 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 TMEM177Q53S58 311 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 XKR9Q5GH70 373 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 NKAPLQ5M9Q1 402 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 TMEM240Q5SV17 173 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CDKAL1Q5VV42 579 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 ANKRD34AQ69YU3 496 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 ANKRD40Q6AI12 368 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 SWSAP1Q6NVH7 229 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 TTI2Q6NXR4 508 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 FDX2Q6P4F2 183 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 ABHD15Q6UXT9 468 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 C1orf186Q6ZWK4 172 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 TMC6Q7Z403 805 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 PLEKHH3Q7Z736 793 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CTU1Q7Z7A3 348 aaKnown RBP4.53□□□□□ -1.68
CD44-226ENST00000527889 PCGF5Q86SE9 256 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 DPP9Q86TI2 863 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 KSR1Q8IVT5 923 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CCDC103Q8IW40 242 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 NELFCDQ8IXH7 590 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 MYOCDQ8IZQ8 938 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 TMEM130Q8N3G9 435 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CPA6Q8N4T0 437 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CHST14Q8NCH0 376 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 CLRN3Q8NCR9 226 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 USP33Q8TEY7 942 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 P2RX5Q93086 422 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 EEF2KMTQ96G04 330 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 AHCYL2Q96HN2 611 aaKnown RBP4.53□□□□□ -1.68
CD44-226ENST00000527889 DHTKD1Q96HY7 919 aaPredicted RBP4.53□□□□□ -1.68
CD44-226ENST00000527889 CDHR1Q96JP9 859 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 ZNF830Q96NB3 372 aaPredicted RBP4.53□□□□□ -1.68
CD44-226ENST00000527889 ARPC5LQ9BPX5 153 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 SEMA6BQ9H3T3 888 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 AKTIPQ9H8T0 292 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 GPRC5CQ9NQ84 441 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 INTS13Q9NVM9 706 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 MTMR10Q9NXD2 777 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 TAB2Q9NYJ8 693 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 RWDD2AQ9UIY3 292 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 ANKRD6Q9Y2G4 727 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 PCDHA2Q9Y5H9 948 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 PCDHA10Q9Y5I2 948 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 BACE2Q9Y5Z0 518 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 SCINQ9Y6U3 715 aa4.53□□□□□ -1.68
CD44-226ENST00000527889 PRUNE2Q8WUY3 3088 aa4.52□□□□□ -1.69
CD44-226ENST00000527889 IGSF9BQ9UPX0 1349 aa4.52□□□□□ -1.69
CD44-226ENST00000527889 MYO18AQ92614 2054 aaKnown RBP4.52□□□□□ -1.69
CD44-226ENST00000527889 FNDC1Q4ZHG4 1894 aaPredicted RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms