RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 DTWD2Q8NBA8 298 aa22.27■■□□□ 1.16
VPS28-203ENST00000524521 TAS1R2Q8TE23 839 aa22.27■■□□□ 1.16
VPS28-203ENST00000524521 TNIP3Q96KP6 325 aa22.27■■□□□ 1.16
VPS28-203ENST00000524521 SPATA17Q96L03 361 aa22.27■■□□□ 1.16
VPS28-203ENST00000524521 LRRC3BQ96PB8 259 aa22.27■■□□□ 1.16
VPS28-203ENST00000524521 B3GNT5Q9BYG0 378 aa22.27■■□□□ 1.16
VPS28-203ENST00000524521 SMG9Q9H0W8 520 aaKnown RBP22.27■■□□□ 1.16
VPS28-203ENST00000524521 TMEM8AQ9HCN3 771 aa22.27■■□□□ 1.16
VPS28-203ENST00000524521 ZMYM5Q9UJ78 669 aa22.27■■□□□ 1.16
VPS28-203ENST00000524521 TRIM49BA6NDI0 452 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 CLDN5O00501 218 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 TRIM66O15016 1216 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 PRAMEF12O95522 483 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 DDX6P26196 483 aaKnown RBP eCLIP22.26■■□□□ 1.15
VPS28-203ENST00000524521 AVPR1AP37288 418 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 KRT39Q6A163 491 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 ACOT1Q86TX2 421 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 CCDC105Q8IYK2 499 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 PJA1Q8NG27 643 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 MED10Q9BTT4 135 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 DDX23Q9BUQ8 820 aaKnown RBP22.26■■□□□ 1.15
VPS28-203ENST00000524521 ZNF518BQ9C0D4 1074 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 IRF2BPLQ9H1B7 796 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 OBP2AQ9NY56 170 aa22.26■■□□□ 1.15
VPS28-203ENST00000524521 FAM170BA6NMN3 283 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 F8VP50 259 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 BIN1O00499 593 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 PSMA7O14818 248 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 CHADO15335 359 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 STX10O60499 249 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 LRRN2O75325 713 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 CD44P16070 742 aaKnown RBP22.25■■□□□ 1.15
VPS28-203ENST00000524521 CCNE1P24864 410 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 GTF2H1P32780 548 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 NDST1P52848 882 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 MCCD1P59942 119 aaPredicted RBP22.25■■□□□ 1.15
VPS28-203ENST00000524521 LRRC63Q05C16 580 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 FCHO2Q0JRZ9 810 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 TCERG1LQ5VWI1 586 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 ZNF852Q6ZMS4 543 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 DENND5BQ6ZUT9 1274 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 MON1AQ86VX9 555 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 CELF5Q8N6W0 485 aaKnown RBP22.25■■□□□ 1.15
VPS28-203ENST00000524521 CCDC150Q8NCX0 1101 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 BPIFB1Q8TDL5 484 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 CSGALNACT1Q8TDX6 532 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 ATOH1Q92858 354 aaPredicted RBP22.25■■□□□ 1.15
VPS28-203ENST00000524521 DHTKD1Q96HY7 919 aaPredicted RBP22.25■■□□□ 1.15
VPS28-203ENST00000524521 C8orf48Q96LL4 319 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 CEP295NLQ96MC4 621 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 ELOVL4Q9GZR5 314 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 TRPC7Q9HCX4 862 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 TRPV5Q9NQA5 729 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 MTF2Q9Y483 593 aaPredicted RBP22.25■■□□□ 1.15
VPS28-203ENST00000524521 COL4A3Q01955 1670 aa22.25■■□□□ 1.15
VPS28-203ENST00000524521 SOBPA7XYQ1 873 aa22.24■■□□□ 1.15
VPS28-203ENST00000524521 TADA3O75528 432 aa22.24■■□□□ 1.15
VPS28-203ENST00000524521 ASPAP45381 313 aa22.24■■□□□ 1.15
VPS28-203ENST00000524521 CACNA2D1P54289 1103 aa22.24■■□□□ 1.15
VPS28-203ENST00000524521 UBE2HP62256 183 aa22.24■■□□□ 1.15
VPS28-203ENST00000524521 NOP14P78316 857 aaKnown RBP22.24■■□□□ 1.15
VPS28-203ENST00000524521 ORC1Q13415 861 aa22.24■■□□□ 1.15
VPS28-203ENST00000524521 KLHL10Q6JEL2 608 aa22.24■■□□□ 1.15
VPS28-203ENST00000524521 APOBEC3GQ9HC16 384 aaKnown RBP22.24■■□□□ 1.15
VPS28-203ENST00000524521 LTB4R2Q9NPC1 389 aa22.24■■□□□ 1.15
VPS28-203ENST00000524521 DENND4CQ5VZ89 1909 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 SLC16A3O15427 465 aaKnown RBP22.23■■□□□ 1.15
VPS28-203ENST00000524521 PPP1R2P41236 205 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 MXI1P50539 228 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 USP46P62068 366 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 ARHGAP29Q52LW3 1261 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 DCAF17Q5H9S7 520 aaPredicted RBP22.23■■□□□ 1.15
VPS28-203ENST00000524521 UNC93AQ86WB7 457 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 ZC3H3Q8IXZ2 948 aaKnown RBP22.23■■□□□ 1.15
VPS28-203ENST00000524521 USP13Q92995 863 aaPredicted RBP22.23■■□□□ 1.15
VPS28-203ENST00000524521 ZFYVE19Q96K21 471 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 CYP2S1Q96SQ9 504 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 NELL2Q99435 816 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 BCO2Q9BYV7 579 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 TDP1Q9NUW8 608 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 TMEM30AQ9NV96 361 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 FAM86C1Q9NVL1 165 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 THG1LQ9NWX6 298 aaKnown RBP22.23■■□□□ 1.15
VPS28-203ENST00000524521 EHD2Q9NZN4 543 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 DLGAP2Q9P1A6 1054 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 HMGXB4Q9UGU5 601 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 MRPS17Q9Y2R5 130 aaKnown RBP22.23■■□□□ 1.15
VPS28-203ENST00000524521 PIAS3Q9Y6X2 628 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 NUP210Q8TEM1 1887 aaPredicted RBP22.23■■□□□ 1.15
VPS28-203ENST00000524521 ATP8B3O60423 1300 aa22.23■■□□□ 1.15
VPS28-203ENST00000524521 PTPRDP23468 1912 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 MAN2B1O00754 1011 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 GLULP15104 373 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 BMP6P22004 513 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 MORC3Q14149 939 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 PAQR9Q6ZVX9 377 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 FAM35AQ86V20 835 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 CRYBG2Q8N1P7 616 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 FBXL13Q8NEE6 735 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 TTC8Q8TAM2 541 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms