RNA–Protein interactions for RNA: ENST00000524481.5

PTPRK-216, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 3,157 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-216ENST00000524481 LONRF1Q17RB8 773 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 SOWAHAQ2M3V2 549 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 FAXCQ5TGI0 409 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 CCDC89Q8N998 374 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 MDM1Q8TC05 714 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 RSAD2Q8WXG1 361 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 AGO3Q9H9G7 860 aaKnown RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 ITGA11Q9UKX5 1188 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 WDR90Q96KV7 1748 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 KIAA0100Q14667 2235 aaKnown RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 IFNAR2P48551 515 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 ARPP19P56211 112 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 UAP1Q16222 522 aaPredicted RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 ZC3H12AQ5D1E8 599 aaKnown RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 C9orf57Q5W0N0 161 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 FOXR1Q6PIV2 292 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 RSPH3Q86UC2 560 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 FAM228AQ86W67 206 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 CD99L2Q8TCZ2 262 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 PAIP2Q9BPZ3 127 aaKnown RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 STRIP2Q9ULQ0 834 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 POC1B-GALNT4F8VUJ3 575 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 PODXLO00592 558 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 CES2O00748 559 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 LRCH4O75427 683 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 BANF1O75531 89 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 TJP3O95049 919 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 TFE3P19532 575 aaPredicted RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 CYP3A5P20815 502 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 CHKAP35790 457 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 GPD2P43304 727 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 BASP1P80723 227 aaKnown RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 CAP1Q01518 475 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 DMTNQ08495 405 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 BYSLQ13895 437 aaKnown RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 DHX34Q14147 1143 aaKnown RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 DCAF4L1Q3SXM0 396 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 BSPRYQ5W0U4 402 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 ALS2CLQ60I27 953 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 DUPD1Q68J44 220 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 TMC3Q7Z5M5 1100 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 ANKMY2Q8IV38 441 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 C3orf20Q8ND61 904 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 ATL2Q8NHH9 583 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 ACTL9Q8TC94 416 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 EMID1Q96A84 441 aaPredicted RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 KATNAL1Q9BW62 490 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 DHX35Q9H5Z1 703 aaKnown RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 KCNK9Q9NPC2 374 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 USP18Q9UMW8 372 aa12.36□□□□□ -0.43
PTPRK-216ENST00000524481 UBQLN1Q9UMX0 589 aaKnown RBP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.36□□□□□ -0.43
PTPRK-216ENST00000524481 LOXHD1Q8IVV2 1947 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 CITO14578 2027 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 CAPN9O14815 690 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 CA12O43570 354 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 FGFR1P11362 822 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 ECHS1P30084 290 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 NDUFV1P49821 464 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 CLCNKBP51801 687 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 ZNF132P52740 706 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 SEC24CP53992 1094 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 MAP3K7CLP57077 242 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 PIGHQ14442 188 aaPredicted RBP12.35□□□□□ -0.43
PTPRK-216ENST00000524481 DCAF6Q58WW2 860 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 SPOCD1Q6ZMY3 1216 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 TTC30AQ86WT1 665 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 FAM131BQ86XD5 332 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 XYLT1Q86Y38 959 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 IQCKQ8N0W5 287 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 CAPS2Q9BXY5 557 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 DCLK3Q9C098 648 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 VIPAS39Q9H9C1 493 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.35□□□□□ -0.43
PTPRK-216ENST00000524481 C2CD2Q9Y426 696 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 CAND2O75155 1236 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 SDC4P31431 198 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 PTGIRP43119 386 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 ATN1P54259 1190 aaPredicted RBP12.35□□□□□ -0.43
PTPRK-216ENST00000524481 OTUD4Q01804 1114 aaKnown RBP12.35□□□□□ -0.43
PTPRK-216ENST00000524481 SP3Q02447 781 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 ZSCAN26Q16670 478 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 IZUMO3Q5VZ72 239 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 FAM71DQ8N9W8 422 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 STKLD1Q8NE28 680 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 EPS8L3Q8TE67 593 aaKnown RBP12.35□□□□□ -0.43
PTPRK-216ENST00000524481 SOCS4Q8WXH5 440 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 ADAM2Q99965 735 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 MTG1Q9BT17 334 aaPredicted RBP12.35□□□□□ -0.43
PTPRK-216ENST00000524481 RHOBTB2Q9BYZ6 727 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 NUDT5Q9UKK9 219 aa12.35□□□□□ -0.43
PTPRK-216ENST00000524481 TMEM88BA6NKF7 163 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 SLC10A3P09131 477 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 TAF6P49848 677 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 CNGA2Q16280 664 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 DARS2Q6PI48 645 aaKnown RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 CEP57Q86XR8 500 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 ADGRF2Q8IZF7 708 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 BCAS4Q8TDM0 211 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 FAM172AQ8WUF8 416 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms