RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 FAM102AQ5T9C2 384 aaPredicted RBP8.57□□□□□ -1.04
LSM1-202ENST00000520286 INTS11Q5TA45 600 aaKnown RBP8.57□□□□□ -1.04
LSM1-202ENST00000520286 ANKRD45Q5TZF3 282 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 AGAP9Q5VTM2 703 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 METRNLQ641Q3 311 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 SPATA31D4Q6ZUB0 917 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 FTSJ3Q8IY81 847 aaKnown RBP8.57□□□□□ -1.04
LSM1-202ENST00000520286 SPPL3Q8TCT6 385 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 MIEF2Q96C03 454 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 PPM1MQ96MI6 270 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 NEU1Q99519 415 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 ZHX3Q9H4I2 956 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 SAYSD1Q9NPB0 183 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 HSFX1Q9UBD0 423 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 CRYL1Q9Y2S2 319 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 ADAMTS20P59510 1910 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 HMX3A6NHT5 357 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 EYA2O00167 538 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 RGS10O43665 173 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 ACTL6BO94805 426 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 CKMT1AP12532 417 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 GYS1P13807 737 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 DDX10Q13206 875 aaKnown RBP8.56□□□□□ -1.04
LSM1-202ENST00000520286 CNGB1Q14028 1251 aaPredicted RBP8.56□□□□□ -1.04
LSM1-202ENST00000520286 ADCK5Q3MIX3 580 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 MANEALQ5VSG8 457 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 SPTY2D1Q68D10 685 aaPredicted RBP8.56□□□□□ -1.04
LSM1-202ENST00000520286 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.56□□□□□ -1.04
LSM1-202ENST00000520286 OR1N1Q8NGS0 311 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 PPP2R3CQ969Q6 453 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 SLC25A32Q9H2D1 315 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 SMOC2Q9H3U7 446 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 MAP3K20Q9NYL2 800 aaKnown RBP8.56□□□□□ -1.04
LSM1-202ENST00000520286 TMOD4Q9NZQ9 345 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 CTTNBP2NLQ9P2B4 639 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 SLC30A1Q9Y6M5 507 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 AATKQ6ZMQ8 1374 aa8.56□□□□□ -1.04
LSM1-202ENST00000520286 hCG_1984214I3L0E3 225 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 J3KRW8 73 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 LEFTY2O00292 366 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 RAD17O75943 681 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 FAM155BO75949 473 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 KCNA3P22001 575 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 CST5P28325 142 aaPredicted RBP8.55□□□□□ -1.04
LSM1-202ENST00000520286 PNLIPRP1P54315 467 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 ALDH18A1P54886 795 aaKnown RBP8.55□□□□□ -1.04
LSM1-202ENST00000520286 GEMIN4P57678 1058 aaKnown RBP8.55□□□□□ -1.04
LSM1-202ENST00000520286 MYO1EQ12965 1108 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 MCTP1Q6DN14 999 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 TMEM108Q6UXF1 575 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 GSPT2Q8IYD1 628 aaKnown RBP8.55□□□□□ -1.04
LSM1-202ENST00000520286 FUKQ8N0W3 1084 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 ANKRD35Q8N283 1001 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 ZNF483Q8TF39 744 aaPredicted RBP8.55□□□□□ -1.04
LSM1-202ENST00000520286 RILPL2Q969X0 211 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 SKA1Q96BD8 255 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 FAM227BQ96M60 508 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 PYM1Q9BRP8 204 aaKnown RBP8.55□□□□□ -1.04
LSM1-202ENST00000520286 RTKNQ9BST9 563 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 PABPC3Q9H361 631 aaKnown RBP8.55□□□□□ -1.04
LSM1-202ENST00000520286 TP63Q9H3D4 680 aaPredicted RBP8.55□□□□□ -1.04
LSM1-202ENST00000520286 RNPEPQ9H4A4 650 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 EPS8L2Q9H6S3 715 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 VPS45Q9NRW7 570 aa8.55□□□□□ -1.04
LSM1-202ENST00000520286 MRPS17Q9Y2R5 130 aaKnown RBP8.55□□□□□ -1.04
LSM1-202ENST00000520286 USP15Q9Y4E8 981 aaPredicted RBP8.55□□□□□ -1.04
LSM1-202ENST00000520286 A0A1B0GTW7 788 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 CCDC78A2IDD5 438 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 B9A039 149 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 TOR1BO14657 336 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 PCDH17O14917 1159 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 DNPH1O43598 174 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 CCNT2O60583 730 aaKnown RBP8.54□□□□□ -1.04
LSM1-202ENST00000520286 SRGAP2O75044 1071 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 SOAT2O75908 522 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 NTSR2O95665 410 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 SRGAP2BP0DMP2 458 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 KCNA2P16389 499 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 ITGALP20701 1170 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 TNFAIP3P21580 790 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 CNTFP26441 200 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 SLC5A2P31639 672 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 PRKAG1P54619 331 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 AP2B1P63010 937 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 C1QL3Q5VWW1 255 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 C2CD5Q86YS7 1000 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 RASGRP3Q8IV61 690 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 OR56A1Q8NGH5 318 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 MED15Q96RN5 788 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 RBM15Q96T37 977 aaKnown RBP eCLIP8.54□□□□□ -1.04
LSM1-202ENST00000520286 HELLSQ9NRZ9 838 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 GGA3Q9NZ52 723 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 LPAR3Q9UBY5 353 aa8.54□□□□□ -1.04
LSM1-202ENST00000520286 FBXO9Q9UK97 447 aaPredicted RBP8.54□□□□□ -1.04
LSM1-202ENST00000520286 ZFR2Q9UPR6 939 aaKnown RBP8.54□□□□□ -1.04
LSM1-202ENST00000520286 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.54□□□□□ -1.04
LSM1-202ENST00000520286 AQRO60306 1485 aaKnown RBP eCLIP8.53□□□□□ -1.046e-7■■■□□ 15.2
LSM1-202ENST00000520286 SUN1O94901 812 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 VIPP01282 170 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 POLBP06746 335 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms