RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 ITGB6P18564 788 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 EIF2S2P20042 333 aaKnown RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 HOXC12P31275 282 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 HOXC13P31276 330 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 HIBADHP31937 336 aaKnown RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 FLT3P36888 993 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 PHKA1P46020 1223 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 GYG1P46976 350 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 PXNP49023 591 aaPredicted RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 SCNN1BP51168 640 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 AMPD2Q01433 879 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 GUCY1A3Q02108 690 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 RUNX1T1Q06455 604 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 CDK5R2Q13319 367 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 PICALMQ13492 652 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 COG2Q14746 738 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 MAPK6Q16659 721 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 SKIDA1Q1XH10 827 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 PAN2Q504Q3 1202 aaKnown RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 ZNF484Q5JVG2 852 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 IQSEC1Q6DN90 963 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 CRTC3Q6UUV7 619 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 UBE2R2Q712K3 238 aaPredicted RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 CABP7Q86V35 215 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 TPH2Q8IWU9 490 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 SLC34A3Q8N130 599 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 IGSF22Q8N9C0 903 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 MFSD2AQ8NA29 543 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 SYTL5Q8TDW5 730 aaPredicted RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 RNF141Q8WVD5 230 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 STAMQ92783 540 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 DDX11Q96FC9 970 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 C12orf42Q96LP6 360 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 CTAGE1Q96RT6 745 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 RPP25Q9BUL9 199 aaKnown RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 PHF20Q9BVI0 1012 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 IDI2Q9BXS1 227 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 NUSAP1Q9BXS6 441 aaKnown RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 RHOBTB2Q9BYZ6 727 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 DUSP15Q9H1R2 295 aaPredicted RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 GSX1Q9H4S2 264 aaPredicted RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 MBD1Q9UIS9 605 aaPredicted RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 PCOLCE2Q9UKZ9 415 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 LUC7L2Q9Y383 392 aaKnown RBP3.85□□□□□ -1.79
CPNE3-204ENST00000517862 BSNQ9UPA5 3926 aa3.85□□□□□ -1.79
CPNE3-204ENST00000517862 TTC3P53804 2025 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 SHISA3A0PJX4 238 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 ARHGAP10A1A4S6 786 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 ANHXE9PGG2 379 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 CBX4O00257 560 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 SH3BP5O60239 455 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 PLIN1O60240 522 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 OPHN1O60890 802 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 CLASP2O75122 1294 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 CAND2O75155 1236 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 DGKIO75912 1065 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 AKAP3O75969 853 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 PAPSS2O95340 614 aaPredicted RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 NPTXRO95502 500 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 PRAMEF1O95521 474 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 FSHBP01225 129 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 LAMP2P13473 410 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 CD59P13987 128 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 IFNGR1P15260 489 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 ZSCAN20P17040 1043 aaPredicted RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 GLDCP23378 1020 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 HOXA6P31267 233 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 CA8P35219 290 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 SART3Q15020 963 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 CRB2Q5IJ48 1285 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 SPOUT1Q5T280 376 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 TMED8Q6PL24 325 aaPredicted RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 ARMCX2Q7L311 632 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 MCM10Q7L590 875 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 PASD1Q8IV76 773 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 ARID3BQ8IVW6 561 aaPredicted RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 ZC3H7AQ8IWR0 971 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 THNSL1Q8IYQ7 743 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 CMTR2Q8IYT2 770 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 TOP6BLQ8N6T0 577 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 MAGEB6Q8N7X4 407 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 MB21D1Q8N884 522 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 TTLL11Q8NHH1 800 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 PLBD2Q8NHP8 589 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 CHTF18Q8WVB6 975 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 SNRNP27Q8WVK2 155 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 JPH3Q8WXH2 748 aaPredicted RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 GTPBP2Q9BX10 602 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 AMNQ9BXJ7 453 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 ASPNQ9BXN1 380 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 UNKQ9C0B0 810 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 PUS7LQ9H0K6 701 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 ARNT2Q9HBZ2 717 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 NGRNQ9NPE2 291 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 SPTLC3Q9NUV7 552 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 THG1LQ9NWX6 298 aaKnown RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 H2AFY2Q9P0M6 372 aaPredicted RBP3.84□□□□□ -1.79
CPNE3-204ENST00000517862 Q9Y3F1 56 aa3.84□□□□□ -1.79
CPNE3-204ENST00000517862 ZMYM6O95789 1325 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms