RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SNX16P57768 344 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 NXPH1P58417 271 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRTAP10-7P60409 375 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARF3P61204 181 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 DCAF7P61962 342 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSMC1P62191 440 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMF1P82094 1093 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRPS9P82933 396 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARF1P84077 181 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZBED6P86452 979 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP2C1P98194 919 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 IRF9Q00978 393 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD83Q01151 205 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 FMO1Q01740 532 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC6A3Q01959 620 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIF23Q02241 960 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 NHLH1Q02575 133 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 POU3F1Q03052 451 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CALD1Q05682 793 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ITIH3Q06033 890 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SRSF4Q08170 494 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADCY2Q08462 1091 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF844Q08AG5 666 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 NEXNQ0ZGT2 675 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRAF2Q12933 501 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDC16Q13042 620 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRPC3Q13507 836 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CUL4AQ13619 759 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 DAG1Q14118 895 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 EIF4A2Q14240 407 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTK2BQ14289 1009 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 FGL2Q14314 439 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 BECN1Q14457 450 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPARCL1Q14515 664 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 R3HDM1Q15032 1099 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 POSTNQ15063 836 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 EPHA7Q15375 998 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SF1Q15637 639 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTPN14Q15678 1187 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 NPY5RQ15761 445 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNGA2Q16280 664 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 MEA1Q16626 185 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 FSCN1Q16658 493 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 PFKFB4Q16877 469 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 UGT8Q16880 541 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM110CQ1W6H9 321 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 INF2Q27J81 1249 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 UAP1L1Q3KQV9 507 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADCK5Q3MIX3 580 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZACNQ401N2 412 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC157Q569K6 752 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ODF2Q5BJF6 829 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC45A4Q5BKX6 768 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC10A5Q5PT55 438 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPATCH4Q5T3I0 446 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKRD45Q5TZF3 282 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC30Q5VVM6 783 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 NAA35Q5VZE5 725 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 MBNL2Q5VZF2 373 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM205BPQ63HN1 556 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 KAZNQ674X7 775 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CREB3L3Q68CJ9 461 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 LMBRD2Q68DH5 695 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SFRP4Q6FHJ7 346 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ISM2Q6H9L7 571 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TANGO2Q6ICL3 276 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 DENND5AQ6IQ26 1287 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANO7Q6IWH7 933 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIAA1841Q6NSI8 718 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 FBXO42Q6P3S6 717 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 GGT6Q6P531 493 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPLX2Q6PUV4 134 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNT2Q6UVM3 1135 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 OLFML1Q6UWY5 402 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABRAXAS1Q6UWZ7 409 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 BEND5Q7L4P6 421 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNK18Q7Z418 384 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 KDELC2Q7Z4H8 507 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRGPREQ86SM8 312 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SDCCAG8Q86SQ7 713 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TTC7BQ86TV6 843 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIM3Q86V86 326 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRTM4Q86VH4 590 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNX32Q86XE0 403 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 VSIG1Q86XK7 387 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 LDLRAD3Q86YD5 345 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKRD13BQ86YJ7 626 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ERC1Q8IUD2 1116 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMTC1Q8IUR5 882 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSCBQ8IWL3 235 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 UNC45BQ8IWX7 931 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CMIPQ8IY22 773 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 FTSJ3Q8IY81 847 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TEX11Q8IYF3 940 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CEP57L1Q8IYX8 460 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 NRSN1Q8IZ57 195 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CACNA2D3Q8IZS8 1091 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TCP11L2Q8N4U5 519 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF808Q8N4W9 903 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 OTUD6BQ8N6M0 293 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms