RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 SPEM1Q8N4L4 309 aa18.68■□□□□ 0.58
DDX41-217ENST00000515562 MYCBPAPQ8TBZ2 947 aa18.68■□□□□ 0.58
DDX41-217ENST00000515562 SPATA17Q96L03 361 aa18.68■□□□□ 0.58
DDX41-217ENST00000515562 GZF1Q9H116 711 aaPredicted RBP18.68■□□□□ 0.58
DDX41-217ENST00000515562 CCL26Q9Y258 94 aa18.68■□□□□ 0.58
DDX41-217ENST00000515562 TRAV19A0A0A6YYK7 116 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 TRIM66O15016 1216 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 LILRB5O75023 590 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 PHACTR2O75167 634 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 PDGFRBP09619 1106 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 ANXA13P27216 316 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 GNL1P36915 607 aaPredicted RBP18.67■□□□□ 0.58
DDX41-217ENST00000515562 PDE6CP51160 858 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 FAM160A1Q05DH4 1040 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 CC2D1AQ6P1N0 951 aaPredicted RBP18.67■□□□□ 0.58
DDX41-217ENST00000515562 SUMF1Q8NBK3 374 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 OR6B3Q8NGW1 331 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 TTC8Q8TAM2 541 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 PCED1BQ96HM7 432 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 FAM83CQ9BQN1 747 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 MRPL45Q9BRJ2 306 aaKnown RBP18.67■□□□□ 0.58
DDX41-217ENST00000515562 XYLT2Q9H1B5 865 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 EPC1Q9H2F5 836 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 TRPC7Q9HCX4 862 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 GKN1Q9NS71 199 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 GTF3C3Q9Y5Q9 886 aa18.67■□□□□ 0.58
DDX41-217ENST00000515562 GREB1Q4ZG55 1949 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 PDXKO00764 312 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 KIF20AO95235 890 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 CKMP06732 381 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 USP17L7P0C7H9 530 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 TDGF1P13385 188 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 BDNFP23560 247 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 GRIK1P39086 918 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 SYKP43405 635 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 CXCL12P48061 93 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 MYL6P60660 151 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 CLDN10P78369 228 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 AMPD2Q01433 879 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 BIRC3Q13489 604 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 RUNX3Q13761 415 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 PON2Q15165 354 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 PDGFRLQ15198 375 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 MDH1BQ5I0G3 518 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 DENND5BQ6ZUT9 1274 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 SYNPOQ8N3V7 929 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 PARD3BQ8TEW8 1205 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 ZNF516Q92618 1163 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 CCDC47Q96A33 483 aaKnown RBP18.66■□□□□ 0.58
DDX41-217ENST00000515562 ELOVL4Q9GZR5 314 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 SCAND2PQ9GZW5 306 aaPredicted RBP18.66■□□□□ 0.58
DDX41-217ENST00000515562 KCTD10Q9H3F6 313 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 VRTNQ9H8Y1 702 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 DMAC2Q9NW81 257 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 NXF1Q9UBU9 619 aaKnown RBP18.66■□□□□ 0.58
DDX41-217ENST00000515562 ZDHHC9Q9Y397 364 aa18.66■□□□□ 0.58
DDX41-217ENST00000515562 FAM237AA0A1B0GTK4 181 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 CLSTN1O94985 981 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 PAPSS2O95340 614 aaPredicted RBP18.65■□□□□ 0.58
DDX41-217ENST00000515562 NR3C1P04150 777 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 PFKLP17858 780 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 CASP4P49662 377 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 USP4Q13107 963 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 CCINQ13939 588 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 KCNB1Q14721 858 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 MTF1Q14872 753 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 ZNF699Q32M78 642 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 TDRD10Q5VZ19 366 aaKnown RBP18.65■□□□□ 0.58
DDX41-217ENST00000515562 SECISBP2LQ93073 1101 aaKnown RBP18.65■□□□□ 0.58
DDX41-217ENST00000515562 EBF3Q9H4W6 596 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 HPS4Q9NQG7 708 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 RBM12Q9NTZ6 932 aaKnown RBP18.65■□□□□ 0.58
DDX41-217ENST00000515562 SMG5Q9UPR3 1016 aaKnown RBP18.65■□□□□ 0.58
DDX41-217ENST00000515562 OTOGLQ3ZCN5 2332 aa18.65■□□□□ 0.58
DDX41-217ENST00000515562 HELZP42694 1942 aaKnown RBP18.64■□□□□ 0.58
DDX41-217ENST00000515562 LRRIQ3A6PVS8 624 aaPredicted RBP18.64■□□□□ 0.57
DDX41-217ENST00000515562 A8MXQ7 604 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 RPN1P04843 607 aaKnown RBP18.64■□□□□ 0.57
DDX41-217ENST00000515562 PTPN1P18031 435 aaKnown RBP18.64■□□□□ 0.57
DDX41-217ENST00000515562 NDUFA8P51970 172 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 NOP14P78316 857 aaKnown RBP18.64■□□□□ 0.57
DDX41-217ENST00000515562 SATB1Q01826 763 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 NCOA4Q13772 614 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 GAS6Q14393 721 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 ZNF77Q15935 545 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 Q6ZS52 159 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 B3GALNT2Q8NCR0 500 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 PLEKHO2Q8TD55 490 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 EXOC4Q96A65 974 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 C8orf48Q96LL4 319 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 TTLL2Q9BWV7 592 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 NCDNQ9UBB6 729 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 FRMD4BQ9Y2L6 1034 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 ANAPC1Q9H1A4 1944 aa18.64■□□□□ 0.57
DDX41-217ENST00000515562 ZNF292O60281 2723 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 A0A1W2PQ27 194 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 A0A1W2PQ64 194 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 A0A1W2PQD8 194 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 F8VP50 259 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 CALUO43852 315 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms